Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18510 and BWI76_RS18515 overlap by 1 nucleotides BWI76_RS18515 and BWI76_RS18520 overlap by 4 nucleotides
BWI76_RS18510: BWI76_RS18510 - membrane protein, at 3,839,402 to 3,840,487
_RS18510
BWI76_RS18515: BWI76_RS18515 - multidrug transporter AcrB, at 3,840,487 to 3,843,549
_RS18515
BWI76_RS18520: BWI76_RS18520 - hypothetical protein, at 3,843,546 to 3,844,511
_RS18520
Position (kb)
3840
3841
3842
3843
3844 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 3839.501 kb on + strand at 3839.502 kb on - strand at 3839.526 kb on + strand, within BWI76_RS18510 at 3839.526 kb on + strand, within BWI76_RS18510 at 3839.567 kb on - strand, within BWI76_RS18510 at 3839.670 kb on - strand, within BWI76_RS18510 at 3839.678 kb on + strand, within BWI76_RS18510 at 3839.812 kb on + strand, within BWI76_RS18510 at 3839.909 kb on + strand, within BWI76_RS18510 at 3839.942 kb on + strand, within BWI76_RS18510 at 3839.972 kb on + strand, within BWI76_RS18510 at 3840.303 kb on - strand, within BWI76_RS18510 at 3840.305 kb on + strand, within BWI76_RS18510 at 3840.313 kb on - strand, within BWI76_RS18510 at 3840.324 kb on + strand, within BWI76_RS18510 at 3840.361 kb on + strand, within BWI76_RS18510 at 3840.399 kb on + strand at 3840.579 kb on - strand at 3840.728 kb on + strand at 3840.731 kb on - strand at 3840.949 kb on - strand, within BWI76_RS18515 at 3840.949 kb on - strand, within BWI76_RS18515 at 3841.128 kb on + strand, within BWI76_RS18515 at 3841.335 kb on + strand, within BWI76_RS18515 at 3841.545 kb on + strand, within BWI76_RS18515 at 3841.695 kb on + strand, within BWI76_RS18515 at 3841.739 kb on + strand, within BWI76_RS18515 at 3841.739 kb on + strand, within BWI76_RS18515 at 3841.794 kb on + strand, within BWI76_RS18515 at 3841.997 kb on - strand, within BWI76_RS18515 at 3842.255 kb on + strand, within BWI76_RS18515 at 3842.279 kb on + strand, within BWI76_RS18515 at 3842.284 kb on + strand, within BWI76_RS18515 at 3842.284 kb on + strand, within BWI76_RS18515 at 3842.504 kb on - strand, within BWI76_RS18515 at 3842.805 kb on + strand, within BWI76_RS18515 at 3842.965 kb on + strand, within BWI76_RS18515 at 3843.543 kb on + strand at 3843.726 kb on - strand at 3843.820 kb on + strand, within BWI76_RS18520 at 3843.848 kb on + strand, within BWI76_RS18520 at 3843.902 kb on - strand, within BWI76_RS18520 at 3843.909 kb on + strand, within BWI76_RS18520 at 3843.909 kb on + strand, within BWI76_RS18520 at 3843.939 kb on + strand, within BWI76_RS18520 at 3844.028 kb on - strand, within BWI76_RS18520 at 3844.028 kb on - strand, within BWI76_RS18520 at 3844.075 kb on - strand, within BWI76_RS18520 at 3844.105 kb on - strand, within BWI76_RS18520 at 3844.115 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.259 kb on + strand, within BWI76_RS18520 at 3844.259 kb on + strand, within BWI76_RS18520 at 3844.387 kb on + strand, within BWI76_RS18520 at 3844.395 kb on - strand, within BWI76_RS18520 at 3844.395 kb on - strand, within BWI76_RS18520 at 3844.544 kb on - strand at 3844.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 3,839,501 + -0.7 3,839,502 - +0.5 3,839,526 + BWI76_RS18510 0.11 -0.1 3,839,526 + BWI76_RS18510 0.11 +0.4 3,839,567 - BWI76_RS18510 0.15 -0.8 3,839,670 - BWI76_RS18510 0.25 +2.4 3,839,678 + BWI76_RS18510 0.25 +0.1 3,839,812 + BWI76_RS18510 0.38 -1.0 3,839,909 + BWI76_RS18510 0.47 -0.2 3,839,942 + BWI76_RS18510 0.50 -0.0 3,839,972 + BWI76_RS18510 0.52 +1.7 3,840,303 - BWI76_RS18510 0.83 -0.1 3,840,305 + BWI76_RS18510 0.83 +0.3 3,840,313 - BWI76_RS18510 0.84 -0.7 3,840,324 + BWI76_RS18510 0.85 +0.1 3,840,361 + BWI76_RS18510 0.88 +1.3 3,840,399 + -0.3 3,840,579 - -1.4 3,840,728 + -0.9 3,840,731 - -0.3 3,840,949 - BWI76_RS18515 0.15 +0.2 3,840,949 - BWI76_RS18515 0.15 +0.2 3,841,128 + BWI76_RS18515 0.21 +0.6 3,841,335 + BWI76_RS18515 0.28 +1.9 3,841,545 + BWI76_RS18515 0.35 +0.9 3,841,695 + BWI76_RS18515 0.39 -2.4 3,841,739 + BWI76_RS18515 0.41 -0.3 3,841,739 + BWI76_RS18515 0.41 +1.4 3,841,794 + BWI76_RS18515 0.43 -0.0 3,841,997 - BWI76_RS18515 0.49 -0.2 3,842,255 + BWI76_RS18515 0.58 +0.4 3,842,279 + BWI76_RS18515 0.59 -1.6 3,842,284 + BWI76_RS18515 0.59 +1.5 3,842,284 + BWI76_RS18515 0.59 +1.1 3,842,504 - BWI76_RS18515 0.66 -1.4 3,842,805 + BWI76_RS18515 0.76 +7.4 3,842,965 + BWI76_RS18515 0.81 -0.2 3,843,543 + -0.5 3,843,726 - +0.4 3,843,820 + BWI76_RS18520 0.28 -0.6 3,843,848 + BWI76_RS18520 0.31 +7.0 3,843,902 - BWI76_RS18520 0.37 -1.6 3,843,909 + BWI76_RS18520 0.38 +0.5 3,843,909 + BWI76_RS18520 0.38 +1.2 3,843,939 + BWI76_RS18520 0.41 +0.2 3,844,028 - BWI76_RS18520 0.50 +0.4 3,844,028 - BWI76_RS18520 0.50 +0.2 3,844,075 - BWI76_RS18520 0.55 +0.3 3,844,105 - BWI76_RS18520 0.58 +0.6 3,844,115 + BWI76_RS18520 0.59 -0.8 3,844,193 + BWI76_RS18520 0.67 -0.5 3,844,193 + BWI76_RS18520 0.67 -0.0 3,844,193 + BWI76_RS18520 0.67 -1.1 3,844,193 + BWI76_RS18520 0.67 -1.9 3,844,193 + BWI76_RS18520 0.67 +0.8 3,844,193 + BWI76_RS18520 0.67 -0.3 3,844,193 + BWI76_RS18520 0.67 +0.5 3,844,193 + BWI76_RS18520 0.67 +0.6 3,844,193 + BWI76_RS18520 0.67 -2.4 3,844,193 + BWI76_RS18520 0.67 +0.2 3,844,193 + BWI76_RS18520 0.67 -1.2 3,844,193 + BWI76_RS18520 0.67 +1.5 3,844,193 + BWI76_RS18520 0.67 -0.2 3,844,193 + BWI76_RS18520 0.67 +0.4 3,844,201 - BWI76_RS18520 0.68 +0.7 3,844,201 - BWI76_RS18520 0.68 +2.3 3,844,201 - BWI76_RS18520 0.68 -1.3 3,844,201 - BWI76_RS18520 0.68 -0.7 3,844,201 - -0.2 3,844,201 - BWI76_RS18520 0.68 -1.5 3,844,201 - BWI76_RS18520 0.68 +0.0 3,844,201 - BWI76_RS18520 0.68 +0.4 3,844,201 - BWI76_RS18520 0.68 -1.7 3,844,201 - BWI76_RS18520 0.68 -0.3 3,844,201 - BWI76_RS18520 0.68 -0.1 3,844,201 - BWI76_RS18520 0.68 -0.4 3,844,259 + BWI76_RS18520 0.74 +0.2 3,844,259 + BWI76_RS18520 0.74 -0.2 3,844,387 + BWI76_RS18520 0.87 -0.3 3,844,395 - BWI76_RS18520 0.88 +1.4 3,844,395 - BWI76_RS18520 0.88 -0.4 3,844,544 - +0.8 3,844,546 + -0.3
Or see this region's nucleotide sequence