Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17945 and BWI76_RS17950 are separated by 74 nucleotides BWI76_RS17950 and BWI76_RS17955 are separated by 159 nucleotides BWI76_RS17955 and BWI76_RS17960 are separated by 43 nucleotides
BWI76_RS17945: BWI76_RS17945 - hypothetical protein, at 3,729,555 to 3,729,845
_RS17945
BWI76_RS17950: BWI76_RS17950 - PhoP regulon feedback inhibition membrane protein MgrB, at 3,729,920 to 3,730,063
_RS17950
BWI76_RS17955: BWI76_RS17955 - hypothetical protein, at 3,730,223 to 3,730,462
_RS17955
BWI76_RS17960: BWI76_RS17960 - DNA-binding transcriptional regulator KdgR, at 3,730,506 to 3,731,297
_RS17960
Position (kb)
3730
3731 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3729.235 kb on - strand at 3729.317 kb on + strand at 3729.317 kb on + strand at 3729.325 kb on - strand at 3729.352 kb on + strand at 3729.362 kb on + strand at 3729.362 kb on + strand at 3729.365 kb on + strand at 3729.370 kb on - strand at 3729.370 kb on - strand at 3729.388 kb on - strand at 3729.442 kb on + strand at 3729.442 kb on + strand at 3729.512 kb on + strand at 3729.527 kb on + strand at 3729.527 kb on + strand at 3729.527 kb on - strand at 3729.535 kb on - strand at 3729.542 kb on + strand at 3729.553 kb on + strand at 3729.553 kb on + strand at 3729.553 kb on + strand at 3729.561 kb on - strand at 3729.561 kb on - strand at 3729.561 kb on - strand at 3729.561 kb on - strand at 3729.561 kb on - strand at 3729.561 kb on - strand at 3729.561 kb on - strand at 3729.780 kb on - strand, within BWI76_RS17945 at 3729.805 kb on - strand, within BWI76_RS17945 at 3729.915 kb on - strand at 3730.096 kb on + strand at 3730.163 kb on + strand at 3730.316 kb on - strand, within BWI76_RS17955 at 3730.368 kb on + strand, within BWI76_RS17955 at 3730.419 kb on + strand, within BWI76_RS17955 at 3730.427 kb on - strand, within BWI76_RS17955 at 3730.667 kb on + strand, within BWI76_RS17960 at 3730.752 kb on - strand, within BWI76_RS17960 at 3730.948 kb on - strand at 3731.023 kb on - strand, within BWI76_RS17960
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 3,729,235 - +1.3 3,729,317 + +1.3 3,729,317 + -1.0 3,729,325 - -0.6 3,729,352 + +0.1 3,729,362 + +0.1 3,729,362 + -0.5 3,729,365 + -0.3 3,729,370 - -0.6 3,729,370 - -1.1 3,729,388 - -0.3 3,729,442 + -1.0 3,729,442 + -0.7 3,729,512 + -0.4 3,729,527 + -0.8 3,729,527 + +2.1 3,729,527 - -0.4 3,729,535 - -0.3 3,729,542 + -0.3 3,729,553 + +0.3 3,729,553 + -2.3 3,729,553 + +0.3 3,729,561 - -0.6 3,729,561 - +1.7 3,729,561 - +0.5 3,729,561 - +0.4 3,729,561 - +1.3 3,729,561 - -0.1 3,729,561 - -0.6 3,729,780 - BWI76_RS17945 0.77 -1.1 3,729,805 - BWI76_RS17945 0.86 -0.6 3,729,915 - +0.2 3,730,096 + +0.7 3,730,163 + +1.0 3,730,316 - BWI76_RS17955 0.39 -2.7 3,730,368 + BWI76_RS17955 0.60 -3.5 3,730,419 + BWI76_RS17955 0.82 -0.3 3,730,427 - BWI76_RS17955 0.85 -0.7 3,730,667 + BWI76_RS17960 0.20 +1.3 3,730,752 - BWI76_RS17960 0.31 -1.0 3,730,948 - -0.7 3,731,023 - BWI76_RS17960 0.65 -1.0
Or see this region's nucleotide sequence