Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17955

Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17945 and BWI76_RS17950 are separated by 74 nucleotidesBWI76_RS17950 and BWI76_RS17955 are separated by 159 nucleotidesBWI76_RS17955 and BWI76_RS17960 are separated by 43 nucleotides BWI76_RS17945: BWI76_RS17945 - hypothetical protein, at 3,729,555 to 3,729,845 _RS17945 BWI76_RS17950: BWI76_RS17950 - PhoP regulon feedback inhibition membrane protein MgrB, at 3,729,920 to 3,730,063 _RS17950 BWI76_RS17955: BWI76_RS17955 - hypothetical protein, at 3,730,223 to 3,730,462 _RS17955 BWI76_RS17960: BWI76_RS17960 - DNA-binding transcriptional regulator KdgR, at 3,730,506 to 3,731,297 _RS17960 Position (kb) 3730 3731Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3729.235 kb on - strandat 3729.317 kb on + strandat 3729.317 kb on + strandat 3729.325 kb on - strandat 3729.352 kb on + strandat 3729.362 kb on + strandat 3729.362 kb on + strandat 3729.365 kb on + strandat 3729.370 kb on - strandat 3729.370 kb on - strandat 3729.388 kb on - strandat 3729.442 kb on + strandat 3729.442 kb on + strandat 3729.512 kb on + strandat 3729.527 kb on + strandat 3729.527 kb on + strandat 3729.527 kb on - strandat 3729.535 kb on - strandat 3729.542 kb on + strandat 3729.553 kb on + strandat 3729.553 kb on + strandat 3729.553 kb on + strandat 3729.561 kb on - strandat 3729.561 kb on - strandat 3729.561 kb on - strandat 3729.561 kb on - strandat 3729.561 kb on - strandat 3729.561 kb on - strandat 3729.561 kb on - strandat 3729.780 kb on - strand, within BWI76_RS17945at 3729.805 kb on - strand, within BWI76_RS17945at 3729.915 kb on - strandat 3730.096 kb on + strandat 3730.163 kb on + strandat 3730.316 kb on - strand, within BWI76_RS17955at 3730.368 kb on + strand, within BWI76_RS17955at 3730.419 kb on + strand, within BWI76_RS17955at 3730.427 kb on - strand, within BWI76_RS17955at 3730.667 kb on + strand, within BWI76_RS17960at 3730.752 kb on - strand, within BWI76_RS17960at 3730.948 kb on - strandat 3731.023 kb on - strand, within BWI76_RS17960

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
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3,729,235 - +1.3
3,729,317 + +1.3
3,729,317 + -1.0
3,729,325 - -0.6
3,729,352 + +0.1
3,729,362 + +0.1
3,729,362 + -0.5
3,729,365 + -0.3
3,729,370 - -0.6
3,729,370 - -1.1
3,729,388 - -0.3
3,729,442 + -1.0
3,729,442 + -0.7
3,729,512 + -0.4
3,729,527 + -0.8
3,729,527 + +2.1
3,729,527 - -0.4
3,729,535 - -0.3
3,729,542 + -0.3
3,729,553 + +0.3
3,729,553 + -2.3
3,729,553 + +0.3
3,729,561 - -0.6
3,729,561 - +1.7
3,729,561 - +0.5
3,729,561 - +0.4
3,729,561 - +1.3
3,729,561 - -0.1
3,729,561 - -0.6
3,729,780 - BWI76_RS17945 0.77 -1.1
3,729,805 - BWI76_RS17945 0.86 -0.6
3,729,915 - +0.2
3,730,096 + +0.7
3,730,163 + +1.0
3,730,316 - BWI76_RS17955 0.39 -2.7
3,730,368 + BWI76_RS17955 0.60 -3.5
3,730,419 + BWI76_RS17955 0.82 -0.3
3,730,427 - BWI76_RS17955 0.85 -0.7
3,730,667 + BWI76_RS17960 0.20 +1.3
3,730,752 - BWI76_RS17960 0.31 -1.0
3,730,948 - -0.7
3,731,023 - BWI76_RS17960 0.65 -1.0

Or see this region's nucleotide sequence