Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08295 and BWI76_RS08300 are separated by 3 nucleotides BWI76_RS08300 and BWI76_RS08305 overlap by 4 nucleotides BWI76_RS08305 and BWI76_RS08310 are separated by 1 nucleotides BWI76_RS08310 and BWI76_RS08315 are separated by 10 nucleotides
BWI76_RS08295: BWI76_RS08295 - hypothetical protein, at 1,755,222 to 1,755,641
_RS08295
BWI76_RS08300: BWI76_RS08300 - DNA-binding response regulator, at 1,755,645 to 1,756,322
_RS08300
BWI76_RS08305: BWI76_RS08305 - two-component sensor histidine kinase, at 1,756,319 to 1,759,006
_RS08305
BWI76_RS08310: BWI76_RS08310 - potassium-transporting ATPase subunit C, at 1,759,008 to 1,759,583
_RS08310
BWI76_RS08315: BWI76_RS08315 - K+-transporting ATPase subunit B, at 1,759,594 to 1,761,642
_RS08315
Position (kb) 1756
1757
1758
1759
1760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1755.329 kb on - strand, within BWI76_RS08295 at 1755.329 kb on - strand, within BWI76_RS08295 at 1755.393 kb on - strand, within BWI76_RS08295 at 1755.418 kb on - strand, within BWI76_RS08295 at 1755.624 kb on - strand at 1756.151 kb on - strand, within BWI76_RS08300 at 1756.369 kb on + strand at 1756.515 kb on + strand at 1756.749 kb on - strand, within BWI76_RS08305 at 1756.752 kb on + strand, within BWI76_RS08305 at 1757.029 kb on - strand, within BWI76_RS08305 at 1757.109 kb on - strand, within BWI76_RS08305 at 1757.145 kb on + strand, within BWI76_RS08305 at 1757.560 kb on + strand, within BWI76_RS08305 at 1757.560 kb on + strand, within BWI76_RS08305 at 1757.631 kb on + strand, within BWI76_RS08305 at 1757.662 kb on - strand, within BWI76_RS08305 at 1757.892 kb on + strand, within BWI76_RS08305 at 1757.950 kb on + strand, within BWI76_RS08305 at 1757.958 kb on - strand, within BWI76_RS08305 at 1758.017 kb on + strand, within BWI76_RS08305 at 1758.042 kb on - strand, within BWI76_RS08305 at 1758.614 kb on - strand, within BWI76_RS08305 at 1758.665 kb on + strand, within BWI76_RS08305 at 1758.769 kb on + strand at 1759.041 kb on - strand at 1759.200 kb on - strand, within BWI76_RS08310 at 1759.426 kb on - strand, within BWI76_RS08310 at 1759.606 kb on + strand at 1759.952 kb on - strand, within BWI76_RS08315
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 1,755,329 - BWI76_RS08295 0.25 +3.6 1,755,329 - BWI76_RS08295 0.25 -0.6 1,755,393 - BWI76_RS08295 0.41 +0.8 1,755,418 - BWI76_RS08295 0.47 -0.3 1,755,624 - +0.1 1,756,151 - BWI76_RS08300 0.75 -1.9 1,756,369 + -0.1 1,756,515 + -0.6 1,756,749 - BWI76_RS08305 0.16 -1.1 1,756,752 + BWI76_RS08305 0.16 +0.1 1,757,029 - BWI76_RS08305 0.26 -2.6 1,757,109 - BWI76_RS08305 0.29 -0.4 1,757,145 + BWI76_RS08305 0.31 -0.7 1,757,560 + BWI76_RS08305 0.46 +0.6 1,757,560 + BWI76_RS08305 0.46 -0.1 1,757,631 + BWI76_RS08305 0.49 +0.7 1,757,662 - BWI76_RS08305 0.50 -0.9 1,757,892 + BWI76_RS08305 0.59 +0.4 1,757,950 + BWI76_RS08305 0.61 +0.6 1,757,958 - BWI76_RS08305 0.61 +3.4 1,758,017 + BWI76_RS08305 0.63 +3.5 1,758,042 - BWI76_RS08305 0.64 +0.0 1,758,614 - BWI76_RS08305 0.85 +9.0 1,758,665 + BWI76_RS08305 0.87 -0.6 1,758,769 + -0.2 1,759,041 - +1.5 1,759,200 - BWI76_RS08310 0.33 -0.4 1,759,426 - BWI76_RS08310 0.73 -2.1 1,759,606 + -3.3 1,759,952 - BWI76_RS08315 0.17 -1.1
Or see this region's nucleotide sequence