Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03935 and BWI76_RS03940 are separated by 139 nucleotides BWI76_RS03940 and BWI76_RS03945 are separated by 11 nucleotides
BWI76_RS03935: BWI76_RS03935 - GntR family transcriptional regulator, at 813,055 to 813,969
_RS03935
BWI76_RS03940: BWI76_RS03940 - alcohol dehydrogenase, at 814,109 to 815,131
_RS03940
BWI76_RS03945: BWI76_RS03945 - altronate oxidoreductase, at 815,143 to 816,588
_RS03945
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 813.110 kb on + strand at 813.110 kb on + strand at 813.112 kb on + strand at 813.112 kb on + strand at 813.118 kb on - strand at 813.119 kb on + strand at 813.119 kb on + strand at 813.119 kb on + strand at 813.119 kb on + strand at 813.120 kb on - strand at 813.129 kb on + strand at 813.129 kb on + strand at 813.129 kb on - strand at 813.132 kb on - strand at 813.135 kb on + strand at 813.155 kb on + strand, within BWI76_RS03935 at 813.213 kb on + strand, within BWI76_RS03935 at 813.213 kb on + strand, within BWI76_RS03935 at 813.401 kb on + strand, within BWI76_RS03935 at 813.409 kb on - strand, within BWI76_RS03935 at 813.439 kb on + strand, within BWI76_RS03935 at 813.448 kb on + strand, within BWI76_RS03935 at 813.448 kb on + strand, within BWI76_RS03935 at 813.456 kb on - strand, within BWI76_RS03935 at 813.500 kb on + strand, within BWI76_RS03935 at 813.508 kb on - strand, within BWI76_RS03935 at 813.508 kb on - strand, within BWI76_RS03935 at 813.508 kb on - strand, within BWI76_RS03935 at 813.510 kb on + strand, within BWI76_RS03935 at 813.513 kb on - strand, within BWI76_RS03935 at 813.605 kb on - strand, within BWI76_RS03935 at 813.753 kb on + strand, within BWI76_RS03935 at 813.781 kb on - strand, within BWI76_RS03935 at 813.782 kb on + strand, within BWI76_RS03935 at 813.801 kb on - strand, within BWI76_RS03935 at 813.845 kb on - strand, within BWI76_RS03935 at 813.853 kb on + strand, within BWI76_RS03935 at 813.860 kb on + strand, within BWI76_RS03935 at 813.883 kb on + strand at 813.883 kb on + strand at 813.883 kb on + strand at 813.891 kb on - strand at 813.891 kb on - strand at 813.891 kb on - strand at 813.891 kb on - strand at 813.925 kb on + strand at 813.930 kb on + strand at 813.930 kb on + strand at 813.930 kb on + strand at 813.930 kb on + strand at 813.930 kb on + strand at 813.931 kb on + strand at 813.935 kb on + strand at 813.938 kb on - strand at 813.938 kb on - strand at 813.938 kb on - strand at 813.938 kb on - strand at 813.938 kb on - strand at 813.938 kb on - strand at 813.938 kb on - strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.964 kb on + strand at 813.970 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.972 kb on - strand at 813.975 kb on - strand at 814.035 kb on - strand at 814.053 kb on + strand at 814.068 kb on - strand at 814.078 kb on + strand at 814.114 kb on + strand at 814.132 kb on - strand at 814.137 kb on - strand at 814.243 kb on + strand, within BWI76_RS03940 at 814.245 kb on + strand, within BWI76_RS03940 at 814.263 kb on - strand at 814.265 kb on + strand, within BWI76_RS03940 at 814.308 kb on + strand, within BWI76_RS03940 at 814.356 kb on + strand, within BWI76_RS03940 at 814.361 kb on + strand, within BWI76_RS03940 at 814.369 kb on - strand at 814.391 kb on + strand, within BWI76_RS03940 at 814.391 kb on + strand, within BWI76_RS03940 at 814.391 kb on + strand, within BWI76_RS03940 at 814.392 kb on - strand, within BWI76_RS03940 at 814.398 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.401 kb on + strand, within BWI76_RS03940 at 814.409 kb on - strand, within BWI76_RS03940 at 814.472 kb on - strand, within BWI76_RS03940 at 814.540 kb on + strand, within BWI76_RS03940 at 814.549 kb on - strand, within BWI76_RS03940 at 814.630 kb on - strand, within BWI76_RS03940 at 814.640 kb on - strand, within BWI76_RS03940 at 814.692 kb on + strand, within BWI76_RS03940 at 814.700 kb on - strand, within BWI76_RS03940 at 814.702 kb on + strand, within BWI76_RS03940 at 814.737 kb on + strand, within BWI76_RS03940 at 814.745 kb on - strand, within BWI76_RS03940 at 814.781 kb on + strand, within BWI76_RS03940 at 814.835 kb on + strand, within BWI76_RS03940 at 814.894 kb on + strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 815.012 kb on + strand, within BWI76_RS03940 at 815.028 kb on + strand, within BWI76_RS03940 at 815.205 kb on - strand at 815.214 kb on - strand at 815.332 kb on + strand, within BWI76_RS03945 at 815.456 kb on + strand, within BWI76_RS03945 at 815.464 kb on - strand, within BWI76_RS03945 at 815.692 kb on + strand, within BWI76_RS03945 at 815.728 kb on + strand, within BWI76_RS03945 at 815.751 kb on - strand, within BWI76_RS03945 at 815.835 kb on + strand, within BWI76_RS03945 at 816.026 kb on - strand, within BWI76_RS03945
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 813,110 + -2.6 813,110 + -1.0 813,112 + -1.3 813,112 + +1.1 813,118 - -1.3 813,119 + -0.9 813,119 + +1.5 813,119 + +0.2 813,119 + -0.6 813,120 - +0.3 813,129 + -0.4 813,129 + +0.9 813,129 - +0.3 813,132 - +0.7 813,135 + +2.4 813,155 + BWI76_RS03935 0.11 +0.5 813,213 + BWI76_RS03935 0.17 +0.6 813,213 + BWI76_RS03935 0.17 +0.3 813,401 + BWI76_RS03935 0.38 +1.9 813,409 - BWI76_RS03935 0.39 +0.2 813,439 + BWI76_RS03935 0.42 -0.7 813,448 + BWI76_RS03935 0.43 -0.3 813,448 + BWI76_RS03935 0.43 +0.8 813,456 - BWI76_RS03935 0.44 +1.0 813,500 + BWI76_RS03935 0.49 +0.3 813,508 - BWI76_RS03935 0.50 +0.8 813,508 - BWI76_RS03935 0.50 -0.2 813,508 - BWI76_RS03935 0.50 -0.4 813,510 + BWI76_RS03935 0.50 +0.5 813,513 - BWI76_RS03935 0.50 -1.2 813,605 - BWI76_RS03935 0.60 -0.4 813,753 + BWI76_RS03935 0.76 -0.7 813,781 - BWI76_RS03935 0.79 -1.8 813,782 + BWI76_RS03935 0.79 -0.4 813,801 - BWI76_RS03935 0.82 -1.0 813,845 - BWI76_RS03935 0.86 +0.1 813,853 + BWI76_RS03935 0.87 +5.4 813,860 + BWI76_RS03935 0.88 +1.0 813,883 + +2.7 813,883 + +0.6 813,883 + -0.9 813,891 - -0.1 813,891 - -0.5 813,891 - +1.6 813,891 - -0.5 813,925 + +0.1 813,930 + -0.9 813,930 + +0.0 813,930 + -1.7 813,930 + -0.6 813,930 + -0.1 813,931 + +0.9 813,935 + -1.7 813,938 - +0.4 813,938 - +1.1 813,938 - +0.2 813,938 - +1.5 813,938 - -1.9 813,938 - +0.0 813,938 - -0.3 813,964 + -3.5 813,964 + -0.6 813,964 + +0.1 813,964 + -0.1 813,964 + -0.5 813,964 + -2.3 813,964 + -2.4 813,964 + +0.3 813,964 + +2.1 813,964 + +0.4 813,970 - -1.5 813,972 - -2.3 813,972 - +0.1 813,972 - +1.1 813,972 - -2.1 813,972 - -1.0 813,972 - +1.8 813,972 - +0.0 813,972 - +1.2 813,972 - -0.2 813,972 - +0.4 813,972 - +2.1 813,972 - -1.7 813,972 - -0.1 813,972 - +0.3 813,972 - -1.0 813,972 - -0.4 813,972 - +0.2 813,975 - -3.3 814,035 - -0.9 814,053 + -1.0 814,068 - +3.7 814,078 + -0.4 814,114 + -2.3 814,132 - -3.1 814,137 - -0.9 814,243 + BWI76_RS03940 0.13 +3.8 814,245 + BWI76_RS03940 0.13 +1.5 814,263 - -0.1 814,265 + BWI76_RS03940 0.15 +3.7 814,308 + BWI76_RS03940 0.19 +0.2 814,356 + BWI76_RS03940 0.24 +0.3 814,361 + BWI76_RS03940 0.25 -0.5 814,369 - +0.5 814,391 + BWI76_RS03940 0.28 +1.1 814,391 + BWI76_RS03940 0.28 +0.7 814,391 + BWI76_RS03940 0.28 +1.4 814,392 - BWI76_RS03940 0.28 +1.2 814,398 - BWI76_RS03940 0.28 +1.1 814,399 - BWI76_RS03940 0.28 +0.6 814,399 - BWI76_RS03940 0.28 -0.4 814,399 - BWI76_RS03940 0.28 +2.4 814,399 - BWI76_RS03940 0.28 +0.5 814,399 - BWI76_RS03940 0.28 +0.6 814,399 - BWI76_RS03940 0.28 +3.9 814,401 + BWI76_RS03940 0.29 +0.3 814,409 - BWI76_RS03940 0.29 +0.1 814,472 - BWI76_RS03940 0.35 -0.7 814,540 + BWI76_RS03940 0.42 -0.2 814,549 - BWI76_RS03940 0.43 +3.8 814,630 - BWI76_RS03940 0.51 +0.6 814,640 - BWI76_RS03940 0.52 -0.1 814,692 + BWI76_RS03940 0.57 -0.5 814,700 - BWI76_RS03940 0.58 +0.6 814,702 + BWI76_RS03940 0.58 -0.5 814,737 + BWI76_RS03940 0.61 -0.7 814,745 - BWI76_RS03940 0.62 +0.8 814,781 + BWI76_RS03940 0.66 -0.8 814,835 + BWI76_RS03940 0.71 -0.5 814,894 + BWI76_RS03940 0.77 +1.0 814,902 - BWI76_RS03940 0.78 +1.0 814,902 - BWI76_RS03940 0.78 -2.8 814,902 - BWI76_RS03940 0.78 +0.7 815,012 + BWI76_RS03940 0.88 +5.2 815,028 + BWI76_RS03940 0.90 -1.5 815,205 - +0.1 815,214 - -0.4 815,332 + BWI76_RS03945 0.13 +0.7 815,456 + BWI76_RS03945 0.22 -1.5 815,464 - BWI76_RS03945 0.22 +0.3 815,692 + BWI76_RS03945 0.38 -2.7 815,728 + BWI76_RS03945 0.40 -1.0 815,751 - BWI76_RS03945 0.42 -0.5 815,835 + BWI76_RS03945 0.48 +0.3 816,026 - BWI76_RS03945 0.61 -0.4
Or see this region's nucleotide sequence