Experiment: MoLS4 with L-Glutamine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2171 and DVU2172 overlap by 1 nucleotides DVU2172 and DVU2173 overlap by 8 nucleotides DVU2173 and DVU2174 are separated by 113 nucleotides DVU2174 and DVU2175 are separated by 53 nucleotides
DVU2171: DVU2171 - portal protein (TIGR), at 2,268,224 to 2,269,777
DVU2171
DVU2172: DVU2172 - hypothetical protein (TIGR), at 2,269,777 to 2,269,998
DVU2172
DVU2173: DVU2173 - hypothetical protein (TIGR), at 2,269,991 to 2,270,116
DVU2173
DVU2174: DVU2174 - hypothetical protein (TIGR), at 2,270,230 to 2,270,907
DVU2174
DVU2175: DVU2175 - adenine specific DNA methyltransferase, putative (TIGR), at 2,270,961 to 2,275,748
DVU2175
Position (kb)
2270
2271 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2269.321 kb on + strand, within DVU2171 at 2269.360 kb on - strand, within DVU2171 at 2269.360 kb on - strand, within DVU2171 at 2269.360 kb on - strand, within DVU2171 at 2269.360 kb on - strand, within DVU2171 at 2269.370 kb on + strand, within DVU2171 at 2269.378 kb on - strand, within DVU2171 at 2269.593 kb on + strand, within DVU2171 at 2269.625 kb on + strand at 2269.628 kb on - strand at 2269.752 kb on + strand at 2269.793 kb on + strand at 2269.830 kb on - strand, within DVU2172 at 2269.888 kb on + strand, within DVU2172 at 2269.888 kb on + strand, within DVU2172 at 2270.005 kb on + strand, within DVU2173 at 2270.023 kb on + strand, within DVU2173 at 2270.023 kb on + strand, within DVU2173 at 2270.031 kb on - strand, within DVU2173 at 2270.328 kb on - strand, within DVU2174 at 2270.436 kb on + strand, within DVU2174 at 2270.436 kb on + strand, within DVU2174 at 2271.103 kb on + strand at 2271.353 kb on - strand at 2271.408 kb on + strand at 2271.580 kb on + strand, within DVU2175 at 2271.590 kb on + strand, within DVU2175
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM remove 2,269,321 + DVU2171 0.71 +0.6 2,269,360 - DVU2171 0.73 -0.6 2,269,360 - DVU2171 0.73 -0.3 2,269,360 - DVU2171 0.73 +0.5 2,269,360 - DVU2171 0.73 -0.1 2,269,370 + DVU2171 0.74 +0.0 2,269,378 - DVU2171 0.74 -0.9 2,269,593 + DVU2171 0.88 -0.4 2,269,625 + +1.2 2,269,628 - -3.1 2,269,752 + -3.1 2,269,793 + +0.0 2,269,830 - DVU2172 0.24 +1.4 2,269,888 + DVU2172 0.50 +0.3 2,269,888 + DVU2172 0.50 -0.4 2,270,005 + DVU2173 0.11 -0.0 2,270,023 + DVU2173 0.25 +0.6 2,270,023 + DVU2173 0.25 +0.1 2,270,031 - DVU2173 0.32 -2.9 2,270,328 - DVU2174 0.14 -0.1 2,270,436 + DVU2174 0.30 -0.3 2,270,436 + DVU2174 0.30 -0.0 2,271,103 + -0.7 2,271,353 - +0.1 2,271,408 + -0.4 2,271,580 + DVU2175 0.13 -1.0 2,271,590 + DVU2175 0.13 +0.0
Or see this region's nucleotide sequence