Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2820

Experiment: MoLS4 with L-Glutamine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2818 and DVU2819 are separated by 163 nucleotidesDVU2819 and DVU2820 are separated by 187 nucleotidesDVU2820 and DVU2821 overlap by 4 nucleotidesDVU2821 and DVU2822 are separated by 467 nucleotides DVU2818: DVU2818 - hypothetical protein (TIGR), at 2,924,566 to 2,924,784 DVU2818 DVU2819: DVU2819 - transcriptional regulator, TetR family (TIGR), at 2,924,948 to 2,925,556 DVU2819 DVU2820: DVU2820 - amidohydrolase family protein (TIGR), at 2,925,744 to 2,926,580 DVU2820 DVU2821: DVU2821 - hypothetical protein (TIGR), at 2,926,577 to 2,926,798 DVU2821 DVU2822: DVU2822 - TRAP dicarboxylate family transporter (TIGR), at 2,927,266 to 2,928,276 DVU2822 Position (kb) 2925 2926 2927Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2924.894 kb on - strandat 2924.903 kb on - strandat 2924.936 kb on + strandat 2924.938 kb on + strandat 2924.951 kb on + strandat 2925.018 kb on - strand, within DVU2819at 2925.083 kb on + strand, within DVU2819at 2925.083 kb on + strand, within DVU2819at 2925.208 kb on - strand, within DVU2819at 2925.361 kb on + strand, within DVU2819at 2925.436 kb on + strand, within DVU2819at 2925.436 kb on + strand, within DVU2819at 2925.451 kb on + strand, within DVU2819at 2925.565 kb on + strandat 2925.573 kb on - strandat 2925.577 kb on - strandat 2925.607 kb on + strandat 2925.607 kb on + strandat 2925.607 kb on + strandat 2925.610 kb on - strandat 2925.610 kb on - strandat 2925.620 kb on - strandat 2925.641 kb on - strandat 2925.648 kb on + strandat 2925.764 kb on + strandat 2925.830 kb on + strand, within DVU2820at 2925.838 kb on - strand, within DVU2820at 2925.838 kb on - strand, within DVU2820at 2925.843 kb on + strand, within DVU2820at 2925.932 kb on - strand, within DVU2820at 2925.966 kb on - strand, within DVU2820at 2925.984 kb on + strand, within DVU2820at 2926.023 kb on + strand, within DVU2820at 2926.068 kb on - strand, within DVU2820at 2926.084 kb on + strand, within DVU2820at 2926.087 kb on - strand, within DVU2820at 2926.092 kb on - strand, within DVU2820at 2926.107 kb on - strand, within DVU2820at 2926.145 kb on + strand, within DVU2820at 2926.153 kb on - strand, within DVU2820at 2926.173 kb on - strand, within DVU2820at 2926.182 kb on - strand, within DVU2820at 2926.195 kb on + strand, within DVU2820at 2926.273 kb on - strand, within DVU2820at 2926.278 kb on + strand, within DVU2820at 2926.295 kb on + strand, within DVU2820at 2926.308 kb on + strand, within DVU2820at 2926.384 kb on + strand, within DVU2820at 2926.404 kb on - strand, within DVU2820at 2926.601 kb on + strand, within DVU2821at 2926.616 kb on - strand, within DVU2821at 2926.698 kb on + strand, within DVU2821at 2926.742 kb on - strand, within DVU2821at 2926.745 kb on - strand, within DVU2821at 2926.865 kb on - strandat 2926.896 kb on + strandat 2926.935 kb on + strandat 2927.190 kb on + strandat 2927.378 kb on + strand, within DVU2822at 2927.386 kb on + strand, within DVU2822at 2927.416 kb on - strand, within DVU2822at 2927.447 kb on + strand, within DVU2822at 2927.485 kb on - strand, within DVU2822at 2927.539 kb on + strand, within DVU2822at 2927.551 kb on + strand, within DVU2822

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM
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2,924,894 - -0.4
2,924,903 - +1.6
2,924,936 + -0.9
2,924,938 + -0.2
2,924,951 + -2.2
2,925,018 - DVU2819 0.11 +0.7
2,925,083 + DVU2819 0.22 +0.2
2,925,083 + DVU2819 0.22 +0.4
2,925,208 - DVU2819 0.43 -1.0
2,925,361 + DVU2819 0.68 +1.3
2,925,436 + DVU2819 0.80 +0.7
2,925,436 + DVU2819 0.80 -0.9
2,925,451 + DVU2819 0.83 -3.2
2,925,565 + +0.9
2,925,573 - -0.1
2,925,577 - +2.3
2,925,607 + -0.2
2,925,607 + -0.4
2,925,607 + -0.4
2,925,610 - -0.1
2,925,610 - +0.0
2,925,620 - +0.4
2,925,641 - -3.3
2,925,648 + +1.7
2,925,764 + -2.0
2,925,830 + DVU2820 0.10 -0.8
2,925,838 - DVU2820 0.11 +0.7
2,925,838 - DVU2820 0.11 -0.6
2,925,843 + DVU2820 0.12 +0.0
2,925,932 - DVU2820 0.22 -1.8
2,925,966 - DVU2820 0.27 -0.1
2,925,984 + DVU2820 0.29 -0.8
2,926,023 + DVU2820 0.33 +0.3
2,926,068 - DVU2820 0.39 -3.5
2,926,084 + DVU2820 0.41 -1.3
2,926,087 - DVU2820 0.41 -1.0
2,926,092 - DVU2820 0.42 -0.7
2,926,107 - DVU2820 0.43 -0.1
2,926,145 + DVU2820 0.48 +0.3
2,926,153 - DVU2820 0.49 +0.5
2,926,173 - DVU2820 0.51 -2.0
2,926,182 - DVU2820 0.52 +0.7
2,926,195 + DVU2820 0.54 -2.3
2,926,273 - DVU2820 0.63 -3.1
2,926,278 + DVU2820 0.64 -0.0
2,926,295 + DVU2820 0.66 +0.0
2,926,308 + DVU2820 0.67 +0.6
2,926,384 + DVU2820 0.76 -1.1
2,926,404 - DVU2820 0.79 -0.3
2,926,601 + DVU2821 0.11 -0.5
2,926,616 - DVU2821 0.18 +0.2
2,926,698 + DVU2821 0.55 +0.5
2,926,742 - DVU2821 0.74 -0.4
2,926,745 - DVU2821 0.76 -3.0
2,926,865 - -0.1
2,926,896 + -0.2
2,926,935 + -0.3
2,927,190 + -3.5
2,927,378 + DVU2822 0.11 -0.0
2,927,386 + DVU2822 0.12 +0.3
2,927,416 - DVU2822 0.15 -0.6
2,927,447 + DVU2822 0.18 +0.0
2,927,485 - DVU2822 0.22 -0.1
2,927,539 + DVU2822 0.27 -0.5
2,927,551 + DVU2822 0.28 -1.2

Or see this region's nucleotide sequence