Experiment: MoLS4 with L-Glutamine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2818 and DVU2819 are separated by 163 nucleotides DVU2819 and DVU2820 are separated by 187 nucleotides DVU2820 and DVU2821 overlap by 4 nucleotides DVU2821 and DVU2822 are separated by 467 nucleotides
DVU2818: DVU2818 - hypothetical protein (TIGR), at 2,924,566 to 2,924,784
DVU2818
DVU2819: DVU2819 - transcriptional regulator, TetR family (TIGR), at 2,924,948 to 2,925,556
DVU2819
DVU2820: DVU2820 - amidohydrolase family protein (TIGR), at 2,925,744 to 2,926,580
DVU2820
DVU2821: DVU2821 - hypothetical protein (TIGR), at 2,926,577 to 2,926,798
DVU2821
DVU2822: DVU2822 - TRAP dicarboxylate family transporter (TIGR), at 2,927,266 to 2,928,276
DVU2822
Position (kb)
2925
2926
2927 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2924.894 kb on - strand at 2924.903 kb on - strand at 2924.936 kb on + strand at 2924.938 kb on + strand at 2924.951 kb on + strand at 2925.018 kb on - strand, within DVU2819 at 2925.083 kb on + strand, within DVU2819 at 2925.083 kb on + strand, within DVU2819 at 2925.208 kb on - strand, within DVU2819 at 2925.361 kb on + strand, within DVU2819 at 2925.436 kb on + strand, within DVU2819 at 2925.436 kb on + strand, within DVU2819 at 2925.451 kb on + strand, within DVU2819 at 2925.565 kb on + strand at 2925.573 kb on - strand at 2925.577 kb on - strand at 2925.607 kb on + strand at 2925.607 kb on + strand at 2925.607 kb on + strand at 2925.610 kb on - strand at 2925.610 kb on - strand at 2925.620 kb on - strand at 2925.641 kb on - strand at 2925.648 kb on + strand at 2925.764 kb on + strand at 2925.830 kb on + strand, within DVU2820 at 2925.838 kb on - strand, within DVU2820 at 2925.838 kb on - strand, within DVU2820 at 2925.843 kb on + strand, within DVU2820 at 2925.932 kb on - strand, within DVU2820 at 2925.966 kb on - strand, within DVU2820 at 2925.984 kb on + strand, within DVU2820 at 2926.023 kb on + strand, within DVU2820 at 2926.068 kb on - strand, within DVU2820 at 2926.084 kb on + strand, within DVU2820 at 2926.087 kb on - strand, within DVU2820 at 2926.092 kb on - strand, within DVU2820 at 2926.107 kb on - strand, within DVU2820 at 2926.145 kb on + strand, within DVU2820 at 2926.153 kb on - strand, within DVU2820 at 2926.173 kb on - strand, within DVU2820 at 2926.182 kb on - strand, within DVU2820 at 2926.195 kb on + strand, within DVU2820 at 2926.273 kb on - strand, within DVU2820 at 2926.278 kb on + strand, within DVU2820 at 2926.295 kb on + strand, within DVU2820 at 2926.308 kb on + strand, within DVU2820 at 2926.384 kb on + strand, within DVU2820 at 2926.404 kb on - strand, within DVU2820 at 2926.601 kb on + strand, within DVU2821 at 2926.616 kb on - strand, within DVU2821 at 2926.698 kb on + strand, within DVU2821 at 2926.742 kb on - strand, within DVU2821 at 2926.745 kb on - strand, within DVU2821 at 2926.865 kb on - strand at 2926.896 kb on + strand at 2926.935 kb on + strand at 2927.190 kb on + strand at 2927.378 kb on + strand, within DVU2822 at 2927.386 kb on + strand, within DVU2822 at 2927.416 kb on - strand, within DVU2822 at 2927.447 kb on + strand, within DVU2822 at 2927.485 kb on - strand, within DVU2822 at 2927.539 kb on + strand, within DVU2822 at 2927.551 kb on + strand, within DVU2822
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM remove 2,924,894 - -0.4 2,924,903 - +1.6 2,924,936 + -0.9 2,924,938 + -0.2 2,924,951 + -2.2 2,925,018 - DVU2819 0.11 +0.7 2,925,083 + DVU2819 0.22 +0.2 2,925,083 + DVU2819 0.22 +0.4 2,925,208 - DVU2819 0.43 -1.0 2,925,361 + DVU2819 0.68 +1.3 2,925,436 + DVU2819 0.80 +0.7 2,925,436 + DVU2819 0.80 -0.9 2,925,451 + DVU2819 0.83 -3.2 2,925,565 + +0.9 2,925,573 - -0.1 2,925,577 - +2.3 2,925,607 + -0.2 2,925,607 + -0.4 2,925,607 + -0.4 2,925,610 - -0.1 2,925,610 - +0.0 2,925,620 - +0.4 2,925,641 - -3.3 2,925,648 + +1.7 2,925,764 + -2.0 2,925,830 + DVU2820 0.10 -0.8 2,925,838 - DVU2820 0.11 +0.7 2,925,838 - DVU2820 0.11 -0.6 2,925,843 + DVU2820 0.12 +0.0 2,925,932 - DVU2820 0.22 -1.8 2,925,966 - DVU2820 0.27 -0.1 2,925,984 + DVU2820 0.29 -0.8 2,926,023 + DVU2820 0.33 +0.3 2,926,068 - DVU2820 0.39 -3.5 2,926,084 + DVU2820 0.41 -1.3 2,926,087 - DVU2820 0.41 -1.0 2,926,092 - DVU2820 0.42 -0.7 2,926,107 - DVU2820 0.43 -0.1 2,926,145 + DVU2820 0.48 +0.3 2,926,153 - DVU2820 0.49 +0.5 2,926,173 - DVU2820 0.51 -2.0 2,926,182 - DVU2820 0.52 +0.7 2,926,195 + DVU2820 0.54 -2.3 2,926,273 - DVU2820 0.63 -3.1 2,926,278 + DVU2820 0.64 -0.0 2,926,295 + DVU2820 0.66 +0.0 2,926,308 + DVU2820 0.67 +0.6 2,926,384 + DVU2820 0.76 -1.1 2,926,404 - DVU2820 0.79 -0.3 2,926,601 + DVU2821 0.11 -0.5 2,926,616 - DVU2821 0.18 +0.2 2,926,698 + DVU2821 0.55 +0.5 2,926,742 - DVU2821 0.74 -0.4 2,926,745 - DVU2821 0.76 -3.0 2,926,865 - -0.1 2,926,896 + -0.2 2,926,935 + -0.3 2,927,190 + -3.5 2,927,378 + DVU2822 0.11 -0.0 2,927,386 + DVU2822 0.12 +0.3 2,927,416 - DVU2822 0.15 -0.6 2,927,447 + DVU2822 0.18 +0.0 2,927,485 - DVU2822 0.22 -0.1 2,927,539 + DVU2822 0.27 -0.5 2,927,551 + DVU2822 0.28 -1.2
Or see this region's nucleotide sequence