Experiment: Ferric citrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0369 and SO0370 are separated by 234 nucleotides SO0370 and SO0371 are separated by 22 nucleotides SO0371 and SO0372 are separated by 179 nucleotides
SO0369: SO0369 - transcriptional regulator, LysR family (NCBI ptt file), at 382,765 to 383,652
SO0369
SO0370: SO0370 - conserved hypothetical protein (NCBI ptt file), at 383,887 to 384,378
SO0370
SO0371: SO0371 - conserved hypothetical protein (NCBI ptt file), at 384,401 to 384,862
SO0371
SO0372: SO0372 - HAD-superfamily hydrolase, subfamily IA, variant 1 protein family (NCBI ptt file), at 385,042 to 385,746
SO0372
Position (kb) 384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 383.418 kb on + strand, within SO0369 at 383.436 kb on - strand, within SO0369 at 383.519 kb on + strand, within SO0369 at 383.524 kb on + strand, within SO0369 at 383.571 kb on + strand at 383.571 kb on + strand at 383.651 kb on + strand at 383.656 kb on + strand at 383.664 kb on - strand at 383.736 kb on + strand at 383.744 kb on - strand at 383.757 kb on - strand at 383.881 kb on + strand at 383.889 kb on - strand at 383.921 kb on + strand at 383.921 kb on + strand at 383.929 kb on - strand at 383.929 kb on - strand at 383.929 kb on - strand at 383.986 kb on + strand, within SO0370 at 383.986 kb on + strand, within SO0370 at 383.988 kb on + strand, within SO0370 at 383.988 kb on + strand, within SO0370 at 383.991 kb on - strand, within SO0370 at 383.996 kb on - strand, within SO0370 at 384.000 kb on + strand, within SO0370 at 384.188 kb on - strand, within SO0370 at 384.188 kb on - strand, within SO0370 at 384.232 kb on - strand, within SO0370 at 384.253 kb on + strand, within SO0370 at 384.321 kb on + strand, within SO0370 at 384.425 kb on - strand at 384.427 kb on + strand at 384.435 kb on - strand at 384.435 kb on - strand at 384.435 kb on - strand at 384.446 kb on + strand at 384.481 kb on + strand, within SO0371 at 384.494 kb on - strand, within SO0371 at 384.533 kb on - strand, within SO0371 at 384.594 kb on - strand, within SO0371 at 384.604 kb on - strand, within SO0371 at 384.607 kb on + strand, within SO0371 at 384.615 kb on - strand, within SO0371 at 384.671 kb on - strand, within SO0371 at 384.691 kb on + strand, within SO0371 at 384.699 kb on - strand, within SO0371 at 384.717 kb on + strand, within SO0371 at 384.725 kb on - strand, within SO0371 at 384.843 kb on - strand at 384.960 kb on - strand at 385.044 kb on - strand at 385.051 kb on + strand at 385.057 kb on + strand at 385.059 kb on - strand at 385.069 kb on + strand at 385.075 kb on + strand at 385.077 kb on - strand at 385.141 kb on + strand, within SO0372 at 385.149 kb on - strand, within SO0372 at 385.301 kb on - strand, within SO0372 at 385.312 kb on + strand, within SO0372 at 385.320 kb on - strand, within SO0372 at 385.395 kb on + strand, within SO0372 at 385.445 kb on - strand, within SO0372 at 385.516 kb on + strand, within SO0372 at 385.553 kb on + strand, within SO0372 at 385.582 kb on + strand, within SO0372 at 385.583 kb on + strand, within SO0372
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor remove 383,418 + SO0369 0.74 +0.9 383,436 - SO0369 0.76 -0.4 383,519 + SO0369 0.85 -0.1 383,524 + SO0369 0.85 +0.1 383,571 + -1.3 383,571 + +0.4 383,651 + +0.3 383,656 + -0.0 383,664 - +1.9 383,736 + -0.2 383,744 - -0.5 383,757 - -0.1 383,881 + +0.4 383,889 - -0.7 383,921 + +0.4 383,921 + +0.3 383,929 - +0.1 383,929 - +0.6 383,929 - -1.0 383,986 + SO0370 0.20 -1.0 383,986 + SO0370 0.20 -0.0 383,988 + SO0370 0.21 +1.0 383,988 + SO0370 0.21 +0.2 383,991 - SO0370 0.21 +0.6 383,996 - SO0370 0.22 +1.3 384,000 + SO0370 0.23 +0.3 384,188 - SO0370 0.61 -0.2 384,188 - SO0370 0.61 -2.5 384,232 - SO0370 0.70 +0.5 384,253 + SO0370 0.74 +1.2 384,321 + SO0370 0.88 +2.3 384,425 - +0.4 384,427 + -0.2 384,435 - -2.9 384,435 - -2.4 384,435 - +0.3 384,446 + +0.4 384,481 + SO0371 0.17 -0.1 384,494 - SO0371 0.20 +1.2 384,533 - SO0371 0.29 -1.2 384,594 - SO0371 0.42 +0.3 384,604 - SO0371 0.44 +0.4 384,607 + SO0371 0.45 -0.5 384,615 - SO0371 0.46 -0.3 384,671 - SO0371 0.58 +0.1 384,691 + SO0371 0.63 +0.7 384,699 - SO0371 0.65 +0.9 384,717 + SO0371 0.68 +0.7 384,725 - SO0371 0.70 -1.5 384,843 - -0.1 384,960 - +0.8 385,044 - +1.0 385,051 + +0.1 385,057 + -0.6 385,059 - +0.3 385,069 + +0.4 385,075 + -0.3 385,077 - +0.2 385,141 + SO0372 0.14 -0.1 385,149 - SO0372 0.15 -0.0 385,301 - SO0372 0.37 +1.1 385,312 + SO0372 0.38 -1.0 385,320 - SO0372 0.39 -0.1 385,395 + SO0372 0.50 +0.2 385,445 - SO0372 0.57 -0.2 385,516 + SO0372 0.67 +0.6 385,553 + SO0372 0.72 -0.3 385,582 + SO0372 0.77 -1.8 385,583 + SO0372 0.77 -1.4
Or see this region's nucleotide sequence