Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1496

Experiment: MoLS4 with L-Glutamine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1494 and DVU1495 are separated by 11 nucleotidesDVU1495 and DVU1496 are separated by 44 nucleotidesDVU1496 and DVU1497 overlap by 8 nucleotidesDVU1497 and DVU1498 overlap by 1 nucleotidesDVU1498 and DVU1499 are separated by 3 nucleotides DVU1494: DVU1494 - hypothetical protein (TIGR), at 1,571,570 to 1,572,733 DVU1494 DVU1495: DVU1495 - hypothetical protein (TIGR), at 1,572,745 to 1,573,089 DVU1495 DVU1496: DVU1496 - hypothetical protein (TIGR), at 1,573,134 to 1,573,631 DVU1496 DVU1497: DVU1497 - head-tail adaptor, putative (TIGR), at 1,573,624 to 1,573,950 DVU1497 DVU1498: DVU1498 - conserved hypothetical protein (TIGR), at 1,573,950 to 1,574,507 DVU1498 DVU1499: DVU1499 - hypothetical protein (TIGR), at 1,574,511 to 1,574,780 DVU1499 Position (kb) 1573 1574Strain fitness (log2 ratio) -3 -2 -1 0 1at 1572.139 kb on - strand, within DVU1494at 1572.153 kb on + strand, within DVU1494at 1572.153 kb on + strand, within DVU1494at 1572.168 kb on + strand, within DVU1494at 1572.168 kb on + strand, within DVU1494at 1572.168 kb on + strand, within DVU1494at 1572.168 kb on + strand, within DVU1494at 1572.183 kb on - strand, within DVU1494at 1572.186 kb on - strand, within DVU1494at 1572.210 kb on - strand, within DVU1494at 1572.214 kb on - strand, within DVU1494at 1572.234 kb on - strand, within DVU1494at 1572.276 kb on + strand, within DVU1494at 1572.386 kb on + strand, within DVU1494at 1572.431 kb on - strand, within DVU1494at 1572.444 kb on - strand, within DVU1494at 1572.528 kb on + strand, within DVU1494at 1572.576 kb on - strand, within DVU1494at 1572.584 kb on + strand, within DVU1494at 1572.793 kb on - strand, within DVU1495at 1572.886 kb on + strand, within DVU1495at 1572.894 kb on - strand, within DVU1495at 1572.894 kb on - strand, within DVU1495at 1572.915 kb on + strand, within DVU1495at 1573.007 kb on + strand, within DVU1495at 1573.020 kb on - strand, within DVU1495at 1573.054 kb on + strand, within DVU1495at 1573.091 kb on + strandat 1573.227 kb on + strand, within DVU1496at 1573.284 kb on + strand, within DVU1496at 1573.292 kb on - strand, within DVU1496at 1573.311 kb on - strand, within DVU1496at 1573.500 kb on + strand, within DVU1496at 1573.501 kb on + strand, within DVU1496at 1573.514 kb on + strand, within DVU1496at 1573.606 kb on - strandat 1573.616 kb on - strandat 1573.647 kb on - strandat 1573.689 kb on + strand, within DVU1497at 1573.782 kb on - strand, within DVU1497at 1573.794 kb on - strand, within DVU1497at 1573.849 kb on - strand, within DVU1497at 1574.102 kb on + strand, within DVU1498at 1574.116 kb on + strand, within DVU1498at 1574.124 kb on - strand, within DVU1498at 1574.124 kb on - strand, within DVU1498at 1574.124 kb on - strand, within DVU1498at 1574.201 kb on + strand, within DVU1498at 1574.209 kb on - strand, within DVU1498at 1574.218 kb on + strand, within DVU1498at 1574.218 kb on - strand, within DVU1498at 1574.301 kb on - strand, within DVU1498at 1574.324 kb on - strand, within DVU1498at 1574.386 kb on + strand, within DVU1498at 1574.391 kb on + strand, within DVU1498at 1574.391 kb on + strand, within DVU1498at 1574.391 kb on + strand, within DVU1498at 1574.443 kb on + strand, within DVU1498at 1574.461 kb on - strandat 1574.490 kb on - strandat 1574.533 kb on - strandat 1574.557 kb on + strand, within DVU1499at 1574.565 kb on - strand, within DVU1499at 1574.623 kb on + strand, within DVU1499

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM
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1,572,139 - DVU1494 0.49 -1.9
1,572,153 + DVU1494 0.50 +0.6
1,572,153 + DVU1494 0.50 +0.6
1,572,168 + DVU1494 0.51 -0.1
1,572,168 + DVU1494 0.51 -0.9
1,572,168 + DVU1494 0.51 -0.5
1,572,168 + DVU1494 0.51 -0.6
1,572,183 - DVU1494 0.53 -0.5
1,572,186 - DVU1494 0.53 +0.8
1,572,210 - DVU1494 0.55 -3.1
1,572,214 - DVU1494 0.55 -0.9
1,572,234 - DVU1494 0.57 -0.4
1,572,276 + DVU1494 0.61 -0.6
1,572,386 + DVU1494 0.70 -0.6
1,572,431 - DVU1494 0.74 +0.5
1,572,444 - DVU1494 0.75 +0.1
1,572,528 + DVU1494 0.82 -0.2
1,572,576 - DVU1494 0.86 -0.1
1,572,584 + DVU1494 0.87 -0.6
1,572,793 - DVU1495 0.14 +0.1
1,572,886 + DVU1495 0.41 -0.3
1,572,894 - DVU1495 0.43 -0.8
1,572,894 - DVU1495 0.43 +0.6
1,572,915 + DVU1495 0.49 -0.6
1,573,007 + DVU1495 0.76 -0.8
1,573,020 - DVU1495 0.80 -3.0
1,573,054 + DVU1495 0.90 +0.3
1,573,091 + -1.5
1,573,227 + DVU1496 0.19 -0.4
1,573,284 + DVU1496 0.30 -2.8
1,573,292 - DVU1496 0.32 -2.7
1,573,311 - DVU1496 0.36 -0.1
1,573,500 + DVU1496 0.73 +0.4
1,573,501 + DVU1496 0.74 +0.1
1,573,514 + DVU1496 0.76 -0.3
1,573,606 - -0.3
1,573,616 - -0.8
1,573,647 - +0.0
1,573,689 + DVU1497 0.20 -0.5
1,573,782 - DVU1497 0.48 -0.3
1,573,794 - DVU1497 0.52 -3.0
1,573,849 - DVU1497 0.69 -0.6
1,574,102 + DVU1498 0.27 +0.2
1,574,116 + DVU1498 0.30 +0.8
1,574,124 - DVU1498 0.31 -0.2
1,574,124 - DVU1498 0.31 -0.4
1,574,124 - DVU1498 0.31 +0.1
1,574,201 + DVU1498 0.45 -3.2
1,574,209 - DVU1498 0.46 -2.9
1,574,218 + DVU1498 0.48 -0.2
1,574,218 - DVU1498 0.48 +0.3
1,574,301 - DVU1498 0.63 -0.2
1,574,324 - DVU1498 0.67 -0.3
1,574,386 + DVU1498 0.78 -0.5
1,574,391 + DVU1498 0.79 +0.6
1,574,391 + DVU1498 0.79 +0.1
1,574,391 + DVU1498 0.79 -3.0
1,574,443 + DVU1498 0.88 +0.6
1,574,461 - -0.2
1,574,490 - -2.8
1,574,533 - -0.8
1,574,557 + DVU1499 0.17 +0.3
1,574,565 - DVU1499 0.20 +0.2
1,574,623 + DVU1499 0.41 -0.3

Or see this region's nucleotide sequence