Experiment: MoLS4 with L-Glutamine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1494 and DVU1495 are separated by 11 nucleotides DVU1495 and DVU1496 are separated by 44 nucleotides DVU1496 and DVU1497 overlap by 8 nucleotides DVU1497 and DVU1498 overlap by 1 nucleotides DVU1498 and DVU1499 are separated by 3 nucleotides
DVU1494: DVU1494 - hypothetical protein (TIGR), at 1,571,570 to 1,572,733
DVU1494
DVU1495: DVU1495 - hypothetical protein (TIGR), at 1,572,745 to 1,573,089
DVU1495
DVU1496: DVU1496 - hypothetical protein (TIGR), at 1,573,134 to 1,573,631
DVU1496
DVU1497: DVU1497 - head-tail adaptor, putative (TIGR), at 1,573,624 to 1,573,950
DVU1497
DVU1498: DVU1498 - conserved hypothetical protein (TIGR), at 1,573,950 to 1,574,507
DVU1498
DVU1499: DVU1499 - hypothetical protein (TIGR), at 1,574,511 to 1,574,780
DVU1499
Position (kb)
1573
1574 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1572.139 kb on - strand, within DVU1494 at 1572.153 kb on + strand, within DVU1494 at 1572.153 kb on + strand, within DVU1494 at 1572.168 kb on + strand, within DVU1494 at 1572.168 kb on + strand, within DVU1494 at 1572.168 kb on + strand, within DVU1494 at 1572.168 kb on + strand, within DVU1494 at 1572.183 kb on - strand, within DVU1494 at 1572.186 kb on - strand, within DVU1494 at 1572.210 kb on - strand, within DVU1494 at 1572.214 kb on - strand, within DVU1494 at 1572.234 kb on - strand, within DVU1494 at 1572.276 kb on + strand, within DVU1494 at 1572.386 kb on + strand, within DVU1494 at 1572.431 kb on - strand, within DVU1494 at 1572.444 kb on - strand, within DVU1494 at 1572.528 kb on + strand, within DVU1494 at 1572.576 kb on - strand, within DVU1494 at 1572.584 kb on + strand, within DVU1494 at 1572.793 kb on - strand, within DVU1495 at 1572.886 kb on + strand, within DVU1495 at 1572.894 kb on - strand, within DVU1495 at 1572.894 kb on - strand, within DVU1495 at 1572.915 kb on + strand, within DVU1495 at 1573.007 kb on + strand, within DVU1495 at 1573.020 kb on - strand, within DVU1495 at 1573.054 kb on + strand, within DVU1495 at 1573.091 kb on + strand at 1573.227 kb on + strand, within DVU1496 at 1573.284 kb on + strand, within DVU1496 at 1573.292 kb on - strand, within DVU1496 at 1573.311 kb on - strand, within DVU1496 at 1573.500 kb on + strand, within DVU1496 at 1573.501 kb on + strand, within DVU1496 at 1573.514 kb on + strand, within DVU1496 at 1573.606 kb on - strand at 1573.616 kb on - strand at 1573.647 kb on - strand at 1573.689 kb on + strand, within DVU1497 at 1573.782 kb on - strand, within DVU1497 at 1573.794 kb on - strand, within DVU1497 at 1573.849 kb on - strand, within DVU1497 at 1574.102 kb on + strand, within DVU1498 at 1574.116 kb on + strand, within DVU1498 at 1574.124 kb on - strand, within DVU1498 at 1574.124 kb on - strand, within DVU1498 at 1574.124 kb on - strand, within DVU1498 at 1574.201 kb on + strand, within DVU1498 at 1574.209 kb on - strand, within DVU1498 at 1574.218 kb on + strand, within DVU1498 at 1574.218 kb on - strand, within DVU1498 at 1574.301 kb on - strand, within DVU1498 at 1574.324 kb on - strand, within DVU1498 at 1574.386 kb on + strand, within DVU1498 at 1574.391 kb on + strand, within DVU1498 at 1574.391 kb on + strand, within DVU1498 at 1574.391 kb on + strand, within DVU1498 at 1574.443 kb on + strand, within DVU1498 at 1574.461 kb on - strand at 1574.490 kb on - strand at 1574.533 kb on - strand at 1574.557 kb on + strand, within DVU1499 at 1574.565 kb on - strand, within DVU1499 at 1574.623 kb on + strand, within DVU1499
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM remove 1,572,139 - DVU1494 0.49 -1.9 1,572,153 + DVU1494 0.50 +0.6 1,572,153 + DVU1494 0.50 +0.6 1,572,168 + DVU1494 0.51 -0.1 1,572,168 + DVU1494 0.51 -0.9 1,572,168 + DVU1494 0.51 -0.5 1,572,168 + DVU1494 0.51 -0.6 1,572,183 - DVU1494 0.53 -0.5 1,572,186 - DVU1494 0.53 +0.8 1,572,210 - DVU1494 0.55 -3.1 1,572,214 - DVU1494 0.55 -0.9 1,572,234 - DVU1494 0.57 -0.4 1,572,276 + DVU1494 0.61 -0.6 1,572,386 + DVU1494 0.70 -0.6 1,572,431 - DVU1494 0.74 +0.5 1,572,444 - DVU1494 0.75 +0.1 1,572,528 + DVU1494 0.82 -0.2 1,572,576 - DVU1494 0.86 -0.1 1,572,584 + DVU1494 0.87 -0.6 1,572,793 - DVU1495 0.14 +0.1 1,572,886 + DVU1495 0.41 -0.3 1,572,894 - DVU1495 0.43 -0.8 1,572,894 - DVU1495 0.43 +0.6 1,572,915 + DVU1495 0.49 -0.6 1,573,007 + DVU1495 0.76 -0.8 1,573,020 - DVU1495 0.80 -3.0 1,573,054 + DVU1495 0.90 +0.3 1,573,091 + -1.5 1,573,227 + DVU1496 0.19 -0.4 1,573,284 + DVU1496 0.30 -2.8 1,573,292 - DVU1496 0.32 -2.7 1,573,311 - DVU1496 0.36 -0.1 1,573,500 + DVU1496 0.73 +0.4 1,573,501 + DVU1496 0.74 +0.1 1,573,514 + DVU1496 0.76 -0.3 1,573,606 - -0.3 1,573,616 - -0.8 1,573,647 - +0.0 1,573,689 + DVU1497 0.20 -0.5 1,573,782 - DVU1497 0.48 -0.3 1,573,794 - DVU1497 0.52 -3.0 1,573,849 - DVU1497 0.69 -0.6 1,574,102 + DVU1498 0.27 +0.2 1,574,116 + DVU1498 0.30 +0.8 1,574,124 - DVU1498 0.31 -0.2 1,574,124 - DVU1498 0.31 -0.4 1,574,124 - DVU1498 0.31 +0.1 1,574,201 + DVU1498 0.45 -3.2 1,574,209 - DVU1498 0.46 -2.9 1,574,218 + DVU1498 0.48 -0.2 1,574,218 - DVU1498 0.48 +0.3 1,574,301 - DVU1498 0.63 -0.2 1,574,324 - DVU1498 0.67 -0.3 1,574,386 + DVU1498 0.78 -0.5 1,574,391 + DVU1498 0.79 +0.6 1,574,391 + DVU1498 0.79 +0.1 1,574,391 + DVU1498 0.79 -3.0 1,574,443 + DVU1498 0.88 +0.6 1,574,461 - -0.2 1,574,490 - -2.8 1,574,533 - -0.8 1,574,557 + DVU1499 0.17 +0.3 1,574,565 - DVU1499 0.20 +0.2 1,574,623 + DVU1499 0.41 -0.3
Or see this region's nucleotide sequence