Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0270

Experiment: MoLS4 with L-Glutamine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0269 and DVU0270 are separated by 239 nucleotidesDVU0270 and DVU0271 overlap by 4 nucleotides DVU0269: DVU0269 - transcriptional regulator, rrf2 protein, putative (TIGR), at 310,226 to 310,723 DVU0269 DVU0270: DVU0270 - sensory box histidine kinase (TIGR), at 310,963 to 313,233 DVU0270 DVU0271: DVU0271 - response regulator (TIGR), at 313,230 to 314,720 DVU0271 Position (kb) 310 311 312 313 314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 310.119 kb on - strandat 310.197 kb on - strandat 310.221 kb on + strandat 310.285 kb on - strand, within DVU0269at 310.355 kb on + strand, within DVU0269at 310.416 kb on + strand, within DVU0269at 310.416 kb on + strand, within DVU0269at 310.507 kb on + strand, within DVU0269at 310.547 kb on - strand, within DVU0269at 310.673 kb on + strand, within DVU0269at 310.733 kb on + strandat 310.734 kb on + strandat 310.791 kb on + strandat 310.818 kb on + strandat 310.818 kb on + strandat 310.818 kb on + strandat 310.826 kb on - strandat 310.924 kb on - strandat 310.934 kb on + strandat 310.968 kb on - strandat 310.978 kb on - strandat 311.006 kb on - strandat 311.044 kb on + strandat 311.109 kb on - strandat 311.109 kb on - strandat 311.119 kb on - strandat 311.124 kb on + strandat 311.124 kb on + strandat 311.124 kb on + strandat 311.124 kb on + strandat 311.153 kb on + strandat 311.203 kb on - strand, within DVU0270at 311.417 kb on + strand, within DVU0270at 311.418 kb on + strand, within DVU0270at 311.450 kb on - strand, within DVU0270at 311.498 kb on + strand, within DVU0270at 311.525 kb on - strand, within DVU0270at 311.694 kb on + strand, within DVU0270at 311.694 kb on + strand, within DVU0270at 311.694 kb on + strand, within DVU0270at 311.702 kb on - strand, within DVU0270at 311.702 kb on - strand, within DVU0270at 311.702 kb on - strand, within DVU0270at 311.753 kb on - strand, within DVU0270at 311.837 kb on + strand, within DVU0270at 311.845 kb on + strand, within DVU0270at 311.845 kb on + strand, within DVU0270at 311.853 kb on - strand, within DVU0270at 311.853 kb on - strand, within DVU0270at 311.853 kb on - strand, within DVU0270at 311.858 kb on - strand, within DVU0270at 311.858 kb on - strand, within DVU0270at 311.906 kb on - strand, within DVU0270at 311.924 kb on + strand, within DVU0270at 312.067 kb on + strand, within DVU0270at 312.100 kb on + strand, within DVU0270at 312.100 kb on + strand, within DVU0270at 312.179 kb on - strand, within DVU0270at 312.213 kb on - strand, within DVU0270at 312.320 kb on + strand, within DVU0270at 312.345 kb on - strand, within DVU0270at 312.357 kb on + strand, within DVU0270at 312.420 kb on + strand, within DVU0270at 312.441 kb on + strand, within DVU0270at 312.505 kb on + strand, within DVU0270at 312.577 kb on - strand, within DVU0270at 312.591 kb on + strand, within DVU0270at 312.599 kb on - strand, within DVU0270at 312.693 kb on + strand, within DVU0270at 312.698 kb on + strand, within DVU0270at 312.698 kb on + strand, within DVU0270at 312.701 kb on - strand, within DVU0270at 312.786 kb on - strand, within DVU0270at 312.849 kb on + strand, within DVU0270at 312.969 kb on + strand, within DVU0270at 312.969 kb on + strand, within DVU0270at 313.038 kb on - strandat 313.057 kb on - strandat 313.108 kb on + strandat 313.108 kb on + strandat 313.108 kb on + strandat 313.108 kb on + strandat 313.109 kb on + strandat 313.116 kb on - strandat 313.116 kb on - strandat 313.116 kb on - strandat 313.137 kb on + strandat 313.237 kb on + strandat 313.245 kb on - strandat 313.345 kb on + strandat 313.345 kb on + strandat 313.417 kb on - strand, within DVU0271at 313.422 kb on - strand, within DVU0271at 313.453 kb on + strand, within DVU0271at 313.461 kb on - strand, within DVU0271at 313.543 kb on - strand, within DVU0271at 313.543 kb on - strand, within DVU0271at 313.582 kb on + strand, within DVU0271at 313.616 kb on + strand, within DVU0271at 313.639 kb on - strand, within DVU0271at 313.671 kb on - strand, within DVU0271at 313.801 kb on + strand, within DVU0271at 313.818 kb on + strand, within DVU0271at 313.833 kb on + strand, within DVU0271at 313.841 kb on - strand, within DVU0271at 313.858 kb on + strand, within DVU0271at 313.876 kb on - strand, within DVU0271at 313.883 kb on + strand, within DVU0271at 313.916 kb on + strand, within DVU0271at 313.982 kb on + strand, within DVU0271at 313.996 kb on + strand, within DVU0271at 313.996 kb on + strand, within DVU0271at 313.996 kb on + strand, within DVU0271at 313.996 kb on + strand, within DVU0271at 314.004 kb on - strand, within DVU0271at 314.061 kb on - strand, within DVU0271at 314.076 kb on + strand, within DVU0271at 314.102 kb on - strand, within DVU0271at 314.173 kb on - strand, within DVU0271at 314.173 kb on - strand, within DVU0271at 314.212 kb on + strand, within DVU0271

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM
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310,119 - -3.0
310,197 - -0.3
310,221 + -0.4
310,285 - DVU0269 0.12 -2.6
310,355 + DVU0269 0.26 -2.9
310,416 + DVU0269 0.38 -0.2
310,416 + DVU0269 0.38 -1.4
310,507 + DVU0269 0.56 -3.6
310,547 - DVU0269 0.64 -1.1
310,673 + DVU0269 0.90 -0.4
310,733 + +0.3
310,734 + -0.4
310,791 + +0.6
310,818 + -2.7
310,818 + -0.1
310,818 + -0.4
310,826 - -0.8
310,924 - -1.4
310,934 + -0.2
310,968 - -0.0
310,978 - -0.0
311,006 - +0.0
311,044 + -0.5
311,109 - -0.8
311,109 - +1.0
311,119 - +0.9
311,124 + +0.1
311,124 + +0.7
311,124 + -2.7
311,124 + -0.2
311,153 + -0.9
311,203 - DVU0270 0.11 -0.8
311,417 + DVU0270 0.20 +0.7
311,418 + DVU0270 0.20 -2.0
311,450 - DVU0270 0.21 -2.1
311,498 + DVU0270 0.24 -0.2
311,525 - DVU0270 0.25 -0.8
311,694 + DVU0270 0.32 +0.0
311,694 + DVU0270 0.32 -4.4
311,694 + DVU0270 0.32 -2.9
311,702 - DVU0270 0.33 -1.0
311,702 - DVU0270 0.33 -4.2
311,702 - DVU0270 0.33 -3.9
311,753 - DVU0270 0.35 +0.2
311,837 + DVU0270 0.38 -0.2
311,845 + DVU0270 0.39 -0.3
311,845 + DVU0270 0.39 -0.4
311,853 - DVU0270 0.39 -0.4
311,853 - DVU0270 0.39 -3.2
311,853 - DVU0270 0.39 -0.4
311,858 - DVU0270 0.39 -3.2
311,858 - DVU0270 0.39 -0.1
311,906 - DVU0270 0.42 -3.5
311,924 + DVU0270 0.42 +1.1
312,067 + DVU0270 0.49 -0.3
312,100 + DVU0270 0.50 -0.3
312,100 + DVU0270 0.50 -0.2
312,179 - DVU0270 0.54 -0.6
312,213 - DVU0270 0.55 -0.1
312,320 + DVU0270 0.60 -0.3
312,345 - DVU0270 0.61 -0.1
312,357 + DVU0270 0.61 -3.5
312,420 + DVU0270 0.64 -1.6
312,441 + DVU0270 0.65 -0.5
312,505 + DVU0270 0.68 -0.1
312,577 - DVU0270 0.71 +1.9
312,591 + DVU0270 0.72 -0.9
312,599 - DVU0270 0.72 +0.3
312,693 + DVU0270 0.76 +0.5
312,698 + DVU0270 0.76 -0.1
312,698 + DVU0270 0.76 -0.2
312,701 - DVU0270 0.77 -0.9
312,786 - DVU0270 0.80 -0.1
312,849 + DVU0270 0.83 +0.8
312,969 + DVU0270 0.88 -0.2
312,969 + DVU0270 0.88 -3.1
313,038 - -3.1
313,057 - -0.7
313,108 + +1.0
313,108 + -3.1
313,108 + -0.7
313,108 + +0.6
313,109 + -0.0
313,116 - +0.6
313,116 - -2.1
313,116 - -3.4
313,137 + -3.1
313,237 + -3.3
313,245 - -0.1
313,345 + -4.1
313,345 + -2.3
313,417 - DVU0271 0.13 -3.1
313,422 - DVU0271 0.13 -0.3
313,453 + DVU0271 0.15 -0.1
313,461 - DVU0271 0.15 -3.0
313,543 - DVU0271 0.21 +0.0
313,543 - DVU0271 0.21 -0.1
313,582 + DVU0271 0.24 -0.2
313,616 + DVU0271 0.26 -0.8
313,639 - DVU0271 0.27 -1.1
313,671 - DVU0271 0.30 -0.3
313,801 + DVU0271 0.38 -0.2
313,818 + DVU0271 0.39 -0.0
313,833 + DVU0271 0.40 -0.1
313,841 - DVU0271 0.41 -0.2
313,858 + DVU0271 0.42 -3.5
313,876 - DVU0271 0.43 -2.7
313,883 + DVU0271 0.44 +0.7
313,916 + DVU0271 0.46 +0.0
313,982 + DVU0271 0.50 -0.2
313,996 + DVU0271 0.51 -4.1
313,996 + DVU0271 0.51 +0.1
313,996 + DVU0271 0.51 -0.8
313,996 + DVU0271 0.51 -0.0
314,004 - DVU0271 0.52 +0.5
314,061 - DVU0271 0.56 -3.6
314,076 + DVU0271 0.57 -0.0
314,102 - DVU0271 0.58 -0.3
314,173 - DVU0271 0.63 -0.4
314,173 - DVU0271 0.63 +0.8
314,212 + DVU0271 0.66 -0.6

Or see this region's nucleotide sequence