Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2384

Experiment: MoLS4 with L-Glutamine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2383 and DVU2384 are separated by 52 nucleotidesDVU2384 and DVU2385 overlap by 1 nucleotides DVU2383: DVU2383 - tonB dependent receptor domain protein (TIGR), at 2,482,430 to 2,485,057 DVU2383 DVU2384: DVU2384 - ABC transporter, periplasmic substrate-binding protein (TIGR), at 2,485,110 to 2,487,029 DVU2384 DVU2385: DVU2385 - ABC transporter, permease protein (TIGR), at 2,487,029 to 2,488,150 DVU2385 Position (kb) 2485 2486 2487 2488Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2484.187 kb on + strand, within DVU2383at 2484.195 kb on + strand, within DVU2383at 2484.208 kb on + strand, within DVU2383at 2484.210 kb on + strand, within DVU2383at 2484.211 kb on - strand, within DVU2383at 2484.218 kb on - strand, within DVU2383at 2484.218 kb on - strand, within DVU2383at 2484.260 kb on + strand, within DVU2383at 2484.345 kb on - strand, within DVU2383at 2484.369 kb on + strand, within DVU2383at 2484.369 kb on + strand, within DVU2383at 2484.377 kb on - strand, within DVU2383at 2484.390 kb on + strand, within DVU2383at 2484.443 kb on + strand, within DVU2383at 2484.498 kb on - strand, within DVU2383at 2484.531 kb on - strand, within DVU2383at 2484.557 kb on + strand, within DVU2383at 2484.680 kb on - strand, within DVU2383at 2484.737 kb on - strand, within DVU2383at 2484.737 kb on - strand, within DVU2383at 2484.737 kb on - strand, within DVU2383at 2484.756 kb on - strand, within DVU2383at 2484.782 kb on - strand, within DVU2383at 2484.797 kb on - strandat 2484.950 kb on - strandat 2484.954 kb on + strandat 2484.962 kb on - strandat 2484.962 kb on - strandat 2485.007 kb on + strandat 2485.064 kb on + strandat 2485.164 kb on + strandat 2485.172 kb on - strandat 2485.211 kb on + strandat 2485.227 kb on - strandat 2485.227 kb on - strandat 2485.233 kb on - strandat 2485.254 kb on + strandat 2485.403 kb on - strand, within DVU2384at 2485.454 kb on + strand, within DVU2384at 2485.589 kb on - strand, within DVU2384at 2485.603 kb on - strand, within DVU2384at 2485.684 kb on - strand, within DVU2384at 2485.699 kb on - strand, within DVU2384at 2485.711 kb on + strand, within DVU2384at 2485.732 kb on + strand, within DVU2384at 2485.740 kb on - strand, within DVU2384at 2485.811 kb on + strand, within DVU2384at 2485.932 kb on - strand, within DVU2384at 2486.052 kb on + strand, within DVU2384at 2486.057 kb on + strand, within DVU2384at 2486.177 kb on + strand, within DVU2384at 2486.204 kb on - strand, within DVU2384at 2486.361 kb on - strand, within DVU2384at 2486.403 kb on - strand, within DVU2384at 2486.439 kb on + strand, within DVU2384at 2486.454 kb on + strand, within DVU2384at 2486.454 kb on + strand, within DVU2384at 2486.472 kb on + strand, within DVU2384at 2486.480 kb on - strand, within DVU2384at 2486.533 kb on + strand, within DVU2384at 2486.571 kb on - strand, within DVU2384at 2486.679 kb on - strand, within DVU2384at 2486.727 kb on + strand, within DVU2384at 2486.752 kb on + strand, within DVU2384at 2486.791 kb on - strand, within DVU2384at 2486.804 kb on + strand, within DVU2384at 2486.878 kb on + strandat 2486.942 kb on + strandat 2486.942 kb on + strandat 2486.942 kb on + strandat 2486.942 kb on + strandat 2486.942 kb on + strandat 2486.942 kb on + strandat 2486.942 kb on + strandat 2486.942 kb on + strandat 2486.950 kb on - strandat 2486.950 kb on - strandat 2486.950 kb on - strandat 2486.950 kb on - strandat 2486.970 kb on - strandat 2486.974 kb on - strandat 2487.072 kb on - strandat 2487.074 kb on - strandat 2487.169 kb on + strand, within DVU2385at 2487.177 kb on - strand, within DVU2385at 2487.212 kb on - strand, within DVU2385at 2487.290 kb on - strand, within DVU2385at 2487.348 kb on - strand, within DVU2385at 2487.383 kb on - strand, within DVU2385at 2487.385 kb on + strand, within DVU2385at 2487.393 kb on - strand, within DVU2385at 2487.428 kb on - strand, within DVU2385at 2487.578 kb on + strand, within DVU2385at 2487.729 kb on + strand, within DVU2385at 2487.737 kb on - strand, within DVU2385at 2487.841 kb on + strand, within DVU2385at 2487.883 kb on - strand, within DVU2385at 2487.899 kb on - strand, within DVU2385at 2487.904 kb on + strand, within DVU2385at 2487.938 kb on - strand, within DVU2385at 2487.995 kb on + strand, within DVU2385at 2488.013 kb on + strand, within DVU2385at 2488.024 kb on + strand, within DVU2385

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM
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2,484,187 + DVU2383 0.67 +0.9
2,484,195 + DVU2383 0.67 -0.2
2,484,208 + DVU2383 0.68 -0.1
2,484,210 + DVU2383 0.68 +0.9
2,484,211 - DVU2383 0.68 -0.7
2,484,218 - DVU2383 0.68 -0.3
2,484,218 - DVU2383 0.68 -4.0
2,484,260 + DVU2383 0.70 +0.7
2,484,345 - DVU2383 0.73 -0.3
2,484,369 + DVU2383 0.74 +0.1
2,484,369 + DVU2383 0.74 +1.7
2,484,377 - DVU2383 0.74 -0.5
2,484,390 + DVU2383 0.75 -0.5
2,484,443 + DVU2383 0.77 +1.1
2,484,498 - DVU2383 0.79 -0.0
2,484,531 - DVU2383 0.80 -0.5
2,484,557 + DVU2383 0.81 -2.4
2,484,680 - DVU2383 0.86 +0.5
2,484,737 - DVU2383 0.88 +0.6
2,484,737 - DVU2383 0.88 +0.6
2,484,737 - DVU2383 0.88 -0.4
2,484,756 - DVU2383 0.89 -0.1
2,484,782 - DVU2383 0.89 -3.3
2,484,797 - -0.3
2,484,950 - +0.1
2,484,954 + -0.1
2,484,962 - -0.0
2,484,962 - -2.1
2,485,007 + +0.6
2,485,064 + +0.1
2,485,164 + +0.4
2,485,172 - +0.1
2,485,211 + +1.0
2,485,227 - +1.5
2,485,227 - -3.3
2,485,233 - -0.1
2,485,254 + -0.9
2,485,403 - DVU2384 0.15 -0.5
2,485,454 + DVU2384 0.18 +0.0
2,485,589 - DVU2384 0.25 +0.6
2,485,603 - DVU2384 0.26 +0.1
2,485,684 - DVU2384 0.30 -0.2
2,485,699 - DVU2384 0.31 -0.0
2,485,711 + DVU2384 0.31 +0.2
2,485,732 + DVU2384 0.32 -0.0
2,485,740 - DVU2384 0.33 -0.6
2,485,811 + DVU2384 0.37 +0.8
2,485,932 - DVU2384 0.43 -0.1
2,486,052 + DVU2384 0.49 +1.1
2,486,057 + DVU2384 0.49 -0.0
2,486,177 + DVU2384 0.56 -0.2
2,486,204 - DVU2384 0.57 +0.3
2,486,361 - DVU2384 0.65 -0.2
2,486,403 - DVU2384 0.67 -0.3
2,486,439 + DVU2384 0.69 +0.3
2,486,454 + DVU2384 0.70 -0.0
2,486,454 + DVU2384 0.70 +0.3
2,486,472 + DVU2384 0.71 -0.4
2,486,480 - DVU2384 0.71 -0.2
2,486,533 + DVU2384 0.74 -0.3
2,486,571 - DVU2384 0.76 -0.4
2,486,679 - DVU2384 0.82 +0.3
2,486,727 + DVU2384 0.84 +0.3
2,486,752 + DVU2384 0.86 +0.0
2,486,791 - DVU2384 0.88 -0.9
2,486,804 + DVU2384 0.88 -0.4
2,486,878 + -0.6
2,486,942 + -0.0
2,486,942 + -3.6
2,486,942 + -0.2
2,486,942 + +0.8
2,486,942 + +0.1
2,486,942 + -0.0
2,486,942 + +0.0
2,486,942 + -0.7
2,486,950 - -0.9
2,486,950 - +1.4
2,486,950 - -0.3
2,486,950 - -0.6
2,486,970 - -0.0
2,486,974 - +1.1
2,487,072 - -0.0
2,487,074 - +0.6
2,487,169 + DVU2385 0.12 -0.1
2,487,177 - DVU2385 0.13 +0.5
2,487,212 - DVU2385 0.16 +0.2
2,487,290 - DVU2385 0.23 +0.3
2,487,348 - DVU2385 0.28 +0.3
2,487,383 - DVU2385 0.32 -0.8
2,487,385 + DVU2385 0.32 +0.5
2,487,393 - DVU2385 0.32 +0.2
2,487,428 - DVU2385 0.36 -0.0
2,487,578 + DVU2385 0.49 -1.5
2,487,729 + DVU2385 0.62 -1.0
2,487,737 - DVU2385 0.63 +0.3
2,487,841 + DVU2385 0.72 -1.2
2,487,883 - DVU2385 0.76 -0.4
2,487,899 - DVU2385 0.78 +0.6
2,487,904 + DVU2385 0.78 +0.2
2,487,938 - DVU2385 0.81 +0.2
2,487,995 + DVU2385 0.86 +0.1
2,488,013 + DVU2385 0.88 -3.0
2,488,024 + DVU2385 0.89 -0.1

Or see this region's nucleotide sequence