Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2317

Experiment: MoLS4 with L-Glutamine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttopB and DVU2317 are separated by 289 nucleotidesDVU2317 and rbr2 are separated by 611 nucleotides DVU2316: topB - DNA topoisomerase III (TIGR), at 2,408,456 to 2,411,044 topB DVU2317: DVU2317 - methyl-accepting chemotaxis protein, putative (TIGR), at 2,411,334 to 2,413,103 DVU2317 DVU2318: rbr2 - rubrerythrin, putative (TIGR), at 2,413,715 to 2,414,209 rbr2 Position (kb) 2411 2412 2413 2414Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2410.456 kb on + strand, within topBat 2410.474 kb on + strand, within topBat 2410.608 kb on - strand, within topBat 2410.689 kb on - strand, within topBat 2410.738 kb on + strand, within topBat 2410.745 kb on + strand, within topBat 2410.777 kb on + strand, within topBat 2410.785 kb on - strand, within topBat 2410.887 kb on - strandat 2411.086 kb on - strandat 2411.102 kb on + strandat 2411.103 kb on - strandat 2411.180 kb on - strandat 2411.289 kb on + strandat 2411.442 kb on - strandat 2411.458 kb on + strandat 2411.564 kb on + strand, within DVU2317at 2411.616 kb on + strand, within DVU2317at 2412.015 kb on - strand, within DVU2317at 2412.098 kb on + strand, within DVU2317at 2412.103 kb on + strand, within DVU2317at 2412.128 kb on - strand, within DVU2317at 2412.135 kb on - strand, within DVU2317at 2412.160 kb on - strand, within DVU2317at 2412.197 kb on - strand, within DVU2317at 2412.277 kb on - strand, within DVU2317at 2412.280 kb on + strand, within DVU2317at 2412.293 kb on - strand, within DVU2317at 2412.301 kb on + strand, within DVU2317at 2412.329 kb on + strand, within DVU2317at 2412.383 kb on - strand, within DVU2317at 2412.405 kb on + strand, within DVU2317at 2412.427 kb on + strand, within DVU2317at 2412.517 kb on - strand, within DVU2317at 2412.548 kb on + strand, within DVU2317at 2412.585 kb on + strand, within DVU2317at 2412.626 kb on - strand, within DVU2317at 2412.916 kb on - strand, within DVU2317at 2412.916 kb on - strand, within DVU2317at 2412.939 kb on - strandat 2412.978 kb on - strandat 2413.020 kb on - strandat 2413.031 kb on + strandat 2413.088 kb on - strandat 2413.176 kb on - strandat 2413.192 kb on + strandat 2413.203 kb on + strandat 2413.203 kb on + strandat 2413.211 kb on - strandat 2413.211 kb on - strandat 2413.211 kb on - strandat 2413.244 kb on - strandat 2413.325 kb on + strandat 2413.350 kb on - strandat 2413.415 kb on + strandat 2413.538 kb on + strandat 2413.553 kb on + strandat 2413.597 kb on - strandat 2413.611 kb on - strandat 2413.759 kb on + strandat 2413.767 kb on - strand, within rbr2at 2413.767 kb on - strand, within rbr2at 2413.837 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM
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2,410,456 + topB DVU2316 0.77 -0.3
2,410,474 + topB DVU2316 0.78 -3.2
2,410,608 - topB DVU2316 0.83 -0.5
2,410,689 - topB DVU2316 0.86 +0.1
2,410,738 + topB DVU2316 0.88 -0.5
2,410,745 + topB DVU2316 0.88 -0.9
2,410,777 + topB DVU2316 0.90 -0.2
2,410,785 - topB DVU2316 0.90 -1.1
2,410,887 - -0.1
2,411,086 - -0.9
2,411,102 + -0.0
2,411,103 - -2.6
2,411,180 - +0.7
2,411,289 + +0.1
2,411,442 - +0.4
2,411,458 + -0.1
2,411,564 + DVU2317 0.13 -0.2
2,411,616 + DVU2317 0.16 +0.0
2,412,015 - DVU2317 0.38 -0.3
2,412,098 + DVU2317 0.43 -3.1
2,412,103 + DVU2317 0.43 +0.1
2,412,128 - DVU2317 0.45 +1.2
2,412,135 - DVU2317 0.45 +0.2
2,412,160 - DVU2317 0.47 +0.4
2,412,197 - DVU2317 0.49 +0.3
2,412,277 - DVU2317 0.53 -1.8
2,412,280 + DVU2317 0.53 -0.3
2,412,293 - DVU2317 0.54 +0.0
2,412,301 + DVU2317 0.55 +0.5
2,412,329 + DVU2317 0.56 +0.0
2,412,383 - DVU2317 0.59 +1.1
2,412,405 + DVU2317 0.61 +2.2
2,412,427 + DVU2317 0.62 -0.8
2,412,517 - DVU2317 0.67 +0.2
2,412,548 + DVU2317 0.69 -0.3
2,412,585 + DVU2317 0.71 -0.2
2,412,626 - DVU2317 0.73 -0.1
2,412,916 - DVU2317 0.89 +0.8
2,412,916 - DVU2317 0.89 +0.3
2,412,939 - -0.2
2,412,978 - +0.5
2,413,020 - -0.6
2,413,031 + +0.1
2,413,088 - +0.8
2,413,176 - -0.5
2,413,192 + -0.2
2,413,203 + -2.2
2,413,203 + -0.0
2,413,211 - +0.3
2,413,211 - -0.4
2,413,211 - -0.5
2,413,244 - -0.1
2,413,325 + -0.8
2,413,350 - -2.7
2,413,415 + -0.1
2,413,538 + +0.1
2,413,553 + -0.5
2,413,597 - +0.5
2,413,611 - +0.2
2,413,759 + -2.3
2,413,767 - rbr2 DVU2318 0.11 -3.3
2,413,767 - rbr2 DVU2318 0.11 -0.0
2,413,837 - rbr2 DVU2318 0.25 +0.1
2,414,037 - rbr2 DVU2318 0.65 +0.3
2,414,037 - rbr2 DVU2318 0.65 -3.1
2,414,037 - rbr2 DVU2318 0.65 +0.0

Or see this region's nucleotide sequence