Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2033

Experiment: MoLS4 with L-Glutamine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2032 and DVU2033 are separated by 71 nucleotidesDVU2033 and DVU2034 are separated by 2 nucleotidesDVU2034 and DVU2035 overlap by 4 nucleotidesDVU2035 and DVU2036 overlap by 11 nucleotidesDVU2036 and DVU2037 are separated by 78 nucleotides DVU2032: DVU2032 - ERF family protein (TIGR), at 2,113,963 to 2,114,676 DVU2032 DVU2033: DVU2033 - hypothetical protein (TIGR), at 2,114,748 to 2,116,019 DVU2033 DVU2034: DVU2034 - hypothetical protein (TIGR), at 2,116,022 to 2,116,387 DVU2034 DVU2035: DVU2035 - plasmid stabilization system family protein (TIGR), at 2,116,384 to 2,116,671 DVU2035 DVU2036: DVU2036 - helix-turn-helix protein, CopG family (TIGR), at 2,116,661 to 2,116,900 DVU2036 DVU2037: DVU2037 - cobS protein, putative (TIGR), at 2,116,979 to 2,117,953 DVU2037 Position (kb) 2114 2115 2116 2117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2113.781 kb on + strandat 2113.781 kb on + strandat 2113.789 kb on - strandat 2113.789 kb on - strandat 2113.801 kb on + strandat 2113.970 kb on + strandat 2113.980 kb on - strandat 2113.980 kb on - strandat 2113.985 kb on + strandat 2113.985 kb on + strandat 2113.993 kb on - strandat 2113.993 kb on - strandat 2114.055 kb on - strand, within DVU2032at 2114.130 kb on + strand, within DVU2032at 2114.150 kb on + strand, within DVU2032at 2114.216 kb on - strand, within DVU2032at 2114.249 kb on - strand, within DVU2032at 2114.258 kb on + strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.261 kb on - strand, within DVU2032at 2114.298 kb on - strand, within DVU2032at 2114.340 kb on + strand, within DVU2032at 2114.403 kb on + strand, within DVU2032at 2114.472 kb on - strand, within DVU2032at 2114.499 kb on - strand, within DVU2032at 2114.536 kb on + strand, within DVU2032at 2114.539 kb on - strand, within DVU2032at 2114.661 kb on + strandat 2114.669 kb on - strandat 2114.708 kb on + strandat 2114.818 kb on - strandat 2114.869 kb on + strandat 2114.877 kb on - strand, within DVU2033at 2114.925 kb on + strand, within DVU2033at 2114.925 kb on + strand, within DVU2033at 2114.988 kb on - strand, within DVU2033at 2115.048 kb on - strand, within DVU2033at 2115.053 kb on - strand, within DVU2033at 2115.074 kb on - strand, within DVU2033at 2115.149 kb on - strand, within DVU2033at 2115.184 kb on - strand, within DVU2033at 2115.188 kb on + strand, within DVU2033at 2115.189 kb on - strand, within DVU2033at 2115.197 kb on + strand, within DVU2033at 2115.197 kb on + strand, within DVU2033at 2115.216 kb on - strand, within DVU2033at 2115.227 kb on + strand, within DVU2033at 2115.490 kb on + strand, within DVU2033at 2115.541 kb on - strand, within DVU2033at 2115.591 kb on - strand, within DVU2033at 2115.640 kb on - strand, within DVU2033at 2115.640 kb on - strand, within DVU2033at 2115.669 kb on - strand, within DVU2033at 2115.752 kb on + strand, within DVU2033at 2115.770 kb on - strand, within DVU2033at 2115.793 kb on + strand, within DVU2033at 2115.820 kb on + strand, within DVU2033at 2115.820 kb on + strand, within DVU2033at 2115.828 kb on - strand, within DVU2033at 2115.828 kb on - strand, within DVU2033at 2115.868 kb on + strand, within DVU2033at 2115.876 kb on - strand, within DVU2033at 2116.006 kb on + strandat 2116.020 kb on - strandat 2116.043 kb on + strandat 2116.157 kb on + strand, within DVU2034at 2116.328 kb on + strand, within DVU2034at 2116.345 kb on + strand, within DVU2034at 2116.390 kb on + strandat 2116.611 kb on + strand, within DVU2035at 2116.981 kb on + strandat 2116.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM
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2,113,781 + +1.2
2,113,781 + +0.5
2,113,789 - +0.7
2,113,789 - -0.1
2,113,801 + -0.0
2,113,970 + -0.8
2,113,980 - -1.1
2,113,980 - -0.8
2,113,985 + -1.4
2,113,985 + -1.7
2,113,993 - -0.0
2,113,993 - -0.4
2,114,055 - DVU2032 0.13 -0.1
2,114,130 + DVU2032 0.23 +0.1
2,114,150 + DVU2032 0.26 -0.3
2,114,216 - DVU2032 0.35 -0.8
2,114,249 - DVU2032 0.40 -0.5
2,114,258 + DVU2032 0.41 -0.2
2,114,261 - DVU2032 0.42 -0.2
2,114,261 - DVU2032 0.42 -1.8
2,114,261 - DVU2032 0.42 -0.1
2,114,261 - DVU2032 0.42 +0.1
2,114,261 - DVU2032 0.42 -0.1
2,114,261 - DVU2032 0.42 -0.1
2,114,298 - DVU2032 0.47 -3.2
2,114,340 + DVU2032 0.53 -0.5
2,114,403 + DVU2032 0.62 +0.4
2,114,472 - DVU2032 0.71 -0.3
2,114,499 - DVU2032 0.75 -3.1
2,114,536 + DVU2032 0.80 -3.1
2,114,539 - DVU2032 0.81 -0.3
2,114,661 + -0.2
2,114,669 - -0.1
2,114,708 + +0.7
2,114,818 - -2.7
2,114,869 + -0.1
2,114,877 - DVU2033 0.10 +0.0
2,114,925 + DVU2033 0.14 -0.2
2,114,925 + DVU2033 0.14 -0.1
2,114,988 - DVU2033 0.19 -0.2
2,115,048 - DVU2033 0.24 -0.1
2,115,053 - DVU2033 0.24 -0.1
2,115,074 - DVU2033 0.26 -0.0
2,115,149 - DVU2033 0.32 -2.3
2,115,184 - DVU2033 0.34 +0.2
2,115,188 + DVU2033 0.35 -3.9
2,115,189 - DVU2033 0.35 -0.2
2,115,197 + DVU2033 0.35 -0.2
2,115,197 + DVU2033 0.35 -2.5
2,115,216 - DVU2033 0.37 -0.0
2,115,227 + DVU2033 0.38 -3.2
2,115,490 + DVU2033 0.58 -1.2
2,115,541 - DVU2033 0.62 -0.1
2,115,591 - DVU2033 0.66 -0.8
2,115,640 - DVU2033 0.70 +0.4
2,115,640 - DVU2033 0.70 +0.6
2,115,669 - DVU2033 0.72 -0.3
2,115,752 + DVU2033 0.79 +1.2
2,115,770 - DVU2033 0.80 -0.2
2,115,793 + DVU2033 0.82 -3.1
2,115,820 + DVU2033 0.84 +0.0
2,115,820 + DVU2033 0.84 -1.0
2,115,828 - DVU2033 0.85 -0.4
2,115,828 - DVU2033 0.85 +0.2
2,115,868 + DVU2033 0.88 -2.7
2,115,876 - DVU2033 0.89 -0.7
2,116,006 + -0.0
2,116,020 - +0.4
2,116,043 + +0.1
2,116,157 + DVU2034 0.37 -0.2
2,116,328 + DVU2034 0.84 -3.2
2,116,345 + DVU2034 0.88 -4.5
2,116,390 + -1.2
2,116,611 + DVU2035 0.79 -1.0
2,116,981 + +0.0
2,116,981 + +0.1

Or see this region's nucleotide sequence