Strain Fitness in Shewanella oneidensis MR-1 around SO1463

Experiment: LB; anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB; anaerobic
1,524,489	+		SO1462	0.42	-0.7
1,524,490	-		SO1462	0.42	+0.7
1,524,527	+		SO1462	0.44	-1.9
1,524,529	-		SO1462	0.45	-2.3
1,524,542	+		SO1462	0.45	+1.0
1,524,548	+		SO1462	0.46	-1.8
1,524,624	-		SO1462	0.50	-0.1
1,524,673	-		SO1462	0.53	-1.5
1,524,726	+		SO1462	0.56	-2.6
1,524,822	+		SO1462	0.62	-0.9
1,524,859	-		SO1462	0.65	+1.5
1,524,874	+		SO1462	0.65	-0.1
1,524,917	+		SO1462	0.68	-2.3
1,524,940	+		SO1462	0.69	-2.0
1,524,948	-		SO1462	0.70	-1.5
1,525,000	+		SO1462	0.73	-0.6
1,525,094	+		SO1462	0.79	+1.9
1,525,145	+		SO1462	0.82	-2.3
1,525,204	-		SO1462	0.85	-1.0
1,525,257	-		SO1462	0.89	+0.8
1,525,297	+				+0.1
1,525,366	+				-0.3
1,525,420	-				-0.9
1,525,485	+				+0.4
1,525,536	+				+0.7
1,525,566	+				+0.3
1,525,588	+				+0.3
1,525,620	+				-0.4
1,525,682	-				+0.4
1,525,698	+				+2.5
1,525,846	+				+0.3
1,525,956	+		SO1463	0.11	+1.1
1,525,963	+		SO1463	0.12	-2.4
1,525,971	+		SO1463	0.12	-0.3
1,526,259	+		SO1463	0.18	-1.3
1,526,267	-		SO1463	0.18	-0.9
1,526,413	-		SO1463	0.22	+0.5
1,526,463	-		SO1463	0.23	+0.9
1,526,502	-		SO1463	0.24	-1.4
1,526,537	+		SO1463	0.24	-0.1
1,526,581	-		SO1463	0.25	-3.0
1,526,607	-		SO1463	0.26	-1.5
1,526,656	+		SO1463	0.27	-1.7
1,526,677	+		SO1463	0.27	+0.2
1,526,687	-		SO1463	0.28	+1.7
1,526,694	-		SO1463	0.28	+0.2
1,526,706	-		SO1463	0.28	-0.1
1,526,751	-		SO1463	0.29	+0.5
1,526,883	-		SO1463	0.32	-2.7
1,526,911	+		SO1463	0.33	+1.9
1,526,911	+		SO1463	0.33	+0.4
1,526,911	+		SO1463	0.33	-1.9
1,526,911	+		SO1463	0.33	-0.3
1,526,911	+		SO1463	0.33	-1.1
1,526,919	-		SO1463	0.33	-1.3
1,526,919	-		SO1463	0.33	-1.6
1,526,919	-		SO1463	0.33	+0.1
1,526,919	-		SO1463	0.33	-3.2
1,527,070	+		SO1463	0.36	-1.3
1,527,158	-		SO1463	0.38	-3.3
1,527,208	+		SO1463	0.39	+0.2
1,527,216	-		SO1463	0.39	-0.6
1,527,216	-		SO1463	0.39	-1.5
1,527,230	-		SO1463	0.40	+0.5
1,527,287	+		SO1463	0.41	+0.5
1,527,322	-		SO1463	0.42	+1.2
1,527,398	-		SO1463	0.43	+0.1
1,527,411	-		SO1463	0.44	-1.9
1,527,443	-		SO1463	0.44	-0.6
1,527,450	+		SO1463	0.44	-1.0
1,527,453	-		SO1463	0.45	-0.8
1,527,458	-		SO1463	0.45	-0.5
1,527,573	-		SO1463	0.47	-1.4
1,527,605	+		SO1463	0.48	-0.9
1,527,754	-		SO1463	0.51	+0.5
1,527,787	+		SO1463	0.52	+1.1
1,527,801	-		SO1463	0.52	-2.6
1,527,820	-		SO1463	0.53	-1.7
1,527,874	+		SO1463	0.54	-0.9
1,527,882	-		SO1463	0.54	-1.0
1,527,925	+		SO1463	0.55	+1.1
1,527,933	-		SO1463	0.55	+2.2
1,528,038	+		SO1463	0.57	+0.7
1,528,046	-		SO1463	0.58	-1.0
1,528,058	+		SO1463	0.58	-0.7
1,528,088	+		SO1463	0.59	+1.5
1,528,096	-		SO1463	0.59	+0.5
1,528,104	-		SO1463	0.59	-2.7
1,528,252	+		SO1463	0.62	+0.4
1,528,276	-		SO1463	0.63	-0.4
1,528,328	+		SO1463	0.64	-1.9
1,528,352	+		SO1463	0.64	-0.2
1,528,509	+		SO1463	0.68	-1.5
1,528,578	+		SO1463	0.69	+0.4
1,528,578	+		SO1463	0.69	-2.8
1,528,578	+		SO1463	0.69	+0.1
1,528,578	+		SO1463	0.69	-1.2
1,528,578	+		SO1463	0.69	-0.5
1,528,578	+		SO1463	0.69	-0.1
1,528,578	+		SO1463	0.69	+0.4
1,528,578	+		SO1463	0.69	-2.2
1,528,578	+		SO1463	0.69	+0.3
1,528,578	+		SO1463	0.69	-1.8
1,528,578	+		SO1463	0.69	+1.2
1,528,578	+		SO1463	0.69	+0.9
1,528,578	+		SO1463	0.69	+1.2
1,528,578	+		SO1463	0.69	-0.1
1,528,578	+		SO1463	0.69	-0.8
1,528,578	+		SO1463	0.69	+1.8
1,528,578	+		SO1463	0.69	-0.1
1,528,578	+		SO1463	0.69	+0.7
1,528,578	+		SO1463	0.69	+0.5
1,528,578	+		SO1463	0.69	-3.6
1,528,578	+		SO1463	0.69	-0.3
1,528,578	+		SO1463	0.69	-1.3
1,528,586	-		SO1463	0.70	+0.2
1,528,586	-		SO1463	0.70	-1.4
1,528,586	-		SO1463	0.70	-1.7
1,528,586	-		SO1463	0.70	-1.1
1,528,586	-		SO1463	0.70	-0.9
1,528,586	-		SO1463	0.70	+0.4
1,528,586	-		SO1463	0.70	+1.2
1,528,586	-		SO1463	0.70	-0.1
1,528,586	-		SO1463	0.70	+2.0
1,528,586	-		SO1463	0.70	-0.4
1,528,612	-		SO1463	0.70	-1.3
1,528,648	+		SO1463	0.71	+0.2
1,528,701	+		SO1463	0.72	+0.5
1,528,735	+		SO1463	0.73	+2.1
1,528,743	-		SO1463	0.73	-0.3
1,528,791	-		SO1463	0.74	-4.0
1,528,882	+		SO1463	0.76	+0.9
1,528,898	-		SO1463	0.77	+1.1
1,528,918	+		SO1463	0.77	+1.7
1,528,921	-		SO1463	0.77	-0.9
1,528,931	-		SO1463	0.77	-0.9
1,528,966	+		SO1463	0.78	+0.8
1,528,966	+		SO1463	0.78	+4.6
1,528,966	+		SO1463	0.78	-0.5
1,528,998	+		SO1463	0.79	+0.3
1,528,998	+		SO1463	0.79	+1.9
1,529,003	+		SO1463	0.79	-0.5
1,529,011	-		SO1463	0.79	-1.5
1,529,038	+		SO1463	0.80	-1.6
1,529,038	+		SO1463	0.80	+1.6
1,529,038	+		SO1463	0.80	-1.4
1,529,046	-		SO1463	0.80	+1.0
1,529,046	-		SO1463	0.80	+0.7
1,529,046	-		SO1463	0.80	-0.8
1,529,046	-		SO1463	0.80	-0.5
1,529,046	-		SO1463	0.80	+0.1
1,529,127	+		SO1463	0.82	+0.0
1,529,135	-		SO1463	0.82	+1.5
1,529,177	+		SO1463	0.83	-0.9
1,529,177	+		SO1463	0.83	+1.1
1,529,227	+		SO1463	0.84	-1.1
1,529,232	+		SO1463	0.84	+0.9
1,529,235	-		SO1463	0.84	-0.3
1,529,276	+		SO1463	0.85	-0.7
1,529,304	+		SO1463	0.85	-2.3
1,529,304	+		SO1463	0.85	+0.9
1,529,304	+		SO1463	0.85	-2.2
1,529,312	-		SO1463	0.86	-0.9
1,529,360	-		SO1463	0.87	-0.5
1,529,452	+		SO1463	0.89	-0.1
1,529,452	+		SO1463	0.89	-0.9
1,529,452	+		SO1463	0.89	-0.5
1,529,452	+		SO1463	0.89	+0.4
1,529,460	-		SO1463	0.89	-1.8
1,529,511	-				+0.2
1,529,536	-				+0.3
1,529,568	-				-0.5
1,529,649	-				+0.3
1,529,687	-				+1.5
1,529,703	+				+0.4
1,529,716	-				+1.3
1,529,716	-				+0.7
1,529,722	+				-3.7
1,529,730	-				+0.0
1,529,764	-				-1.5
1,529,828	+				+0.7
1,529,899	+				+0.1
1,529,907	+				-0.0
1,529,907	+				+0.3
1,529,912	+				+0.4
1,529,915	-				+1.0
1,529,961	-				+0.1
1,529,961	-				+0.7
1,529,961	-				-0.0
1,529,961	-				+1.3
1,529,961	-				-0.5
1,529,961	-				-2.7
1,529,961	-				-0.0