Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0071 and SO0072 are separated by 92 nucleotides SO0072 and SO0073 are separated by 40 nucleotides SO0073 and SO0074 overlap by 4 nucleotides
SO0071: SO0071 - hydrolase, alpha/beta hydrolase fold family (NCBI ptt file), at 82,641 to 84,260
SO0071
SO0072: SO0072 - transcriptional regulator, GntR family (NCBI ptt file), at 84,353 to 84,724
SO0072
SO0073: SO0073 - ABC transporter, ATP-binding protein (NCBI ptt file), at 84,765 to 85,628
SO0073
SO0074: SO0074 - hypothetical protein (NCBI ptt file), at 85,625 to 86,932
SO0074
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 83.806 kb on + strand, within SO0071 at 83.861 kb on - strand, within SO0071 at 83.863 kb on + strand, within SO0071 at 83.863 kb on + strand, within SO0071 at 83.863 kb on + strand, within SO0071 at 83.871 kb on - strand, within SO0071 at 83.871 kb on - strand, within SO0071 at 83.871 kb on - strand, within SO0071 at 83.871 kb on - strand, within SO0071 at 83.871 kb on - strand, within SO0071 at 83.871 kb on - strand, within SO0071 at 83.871 kb on - strand, within SO0071 at 83.883 kb on + strand, within SO0071 at 83.891 kb on - strand, within SO0071 at 83.897 kb on + strand, within SO0071 at 83.897 kb on + strand, within SO0071 at 83.897 kb on + strand, within SO0071 at 83.916 kb on + strand, within SO0071 at 83.916 kb on + strand, within SO0071 at 83.924 kb on - strand, within SO0071 at 83.924 kb on - strand, within SO0071 at 83.974 kb on + strand, within SO0071 at 84.056 kb on + strand, within SO0071 at 84.190 kb on + strand at 84.219 kb on - strand at 84.485 kb on + strand, within SO0072 at 84.493 kb on - strand, within SO0072 at 84.547 kb on + strand, within SO0072 at 84.552 kb on + strand, within SO0072 at 84.552 kb on + strand, within SO0072 at 84.552 kb on + strand, within SO0072 at 84.552 kb on + strand, within SO0072 at 84.552 kb on + strand, within SO0072 at 84.552 kb on + strand, within SO0072 at 84.552 kb on + strand, within SO0072 at 84.560 kb on - strand, within SO0072 at 84.560 kb on - strand, within SO0072 at 84.564 kb on + strand, within SO0072 at 84.564 kb on + strand, within SO0072 at 84.672 kb on + strand, within SO0072 at 84.855 kb on + strand, within SO0073 at 84.939 kb on + strand, within SO0073 at 84.946 kb on + strand, within SO0073 at 84.979 kb on - strand, within SO0073 at 84.996 kb on + strand, within SO0073 at 85.012 kb on + strand, within SO0073 at 85.029 kb on + strand, within SO0073 at 85.055 kb on - strand, within SO0073 at 85.141 kb on - strand, within SO0073 at 85.153 kb on + strand, within SO0073 at 85.234 kb on + strand, within SO0073 at 85.234 kb on + strand, within SO0073 at 85.270 kb on + strand, within SO0073 at 85.270 kb on + strand, within SO0073 at 85.270 kb on + strand, within SO0073 at 85.278 kb on - strand, within SO0073 at 85.315 kb on + strand, within SO0073 at 85.368 kb on + strand, within SO0073 at 85.390 kb on + strand, within SO0073 at 85.455 kb on - strand, within SO0073 at 85.488 kb on - strand, within SO0073 at 85.488 kb on - strand, within SO0073 at 85.525 kb on + strand, within SO0073 at 85.552 kb on - strand at 85.619 kb on + strand at 85.624 kb on + strand at 85.632 kb on - strand at 85.632 kb on - strand at 85.766 kb on + strand, within SO0074 at 85.923 kb on + strand, within SO0074 at 85.938 kb on + strand, within SO0074 at 85.972 kb on + strand, within SO0074 at 85.972 kb on + strand, within SO0074 at 86.030 kb on + strand, within SO0074 at 86.031 kb on + strand, within SO0074 at 86.053 kb on + strand, within SO0074 at 86.061 kb on - strand, within SO0074 at 86.162 kb on - strand, within SO0074 at 86.199 kb on + strand, within SO0074 at 86.203 kb on + strand, within SO0074 at 86.204 kb on + strand, within SO0074 at 86.212 kb on - strand, within SO0074 at 86.224 kb on + strand, within SO0074 at 86.232 kb on + strand, within SO0074 at 86.234 kb on + strand, within SO0074 at 86.262 kb on + strand, within SO0074 at 86.357 kb on + strand, within SO0074 at 86.365 kb on - strand, within SO0074 at 86.399 kb on + strand, within SO0074 at 86.452 kb on + strand, within SO0074 at 86.552 kb on + strand, within SO0074 at 86.552 kb on + strand, within SO0074 at 86.620 kb on - strand, within SO0074 at 86.620 kb on - strand, within SO0074
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 83,806 + SO0071 0.72 -3.6 83,861 - SO0071 0.75 -1.5 83,863 + SO0071 0.75 +1.4 83,863 + SO0071 0.75 -0.8 83,863 + SO0071 0.75 -0.2 83,871 - SO0071 0.76 +1.1 83,871 - SO0071 0.76 -2.1 83,871 - SO0071 0.76 +1.2 83,871 - SO0071 0.76 +0.1 83,871 - SO0071 0.76 -2.4 83,871 - SO0071 0.76 +0.1 83,871 - SO0071 0.76 -0.7 83,883 + SO0071 0.77 +1.2 83,891 - SO0071 0.77 +0.0 83,897 + SO0071 0.78 -1.1 83,897 + SO0071 0.78 -0.3 83,897 + SO0071 0.78 +0.2 83,916 + SO0071 0.79 +0.8 83,916 + SO0071 0.79 +0.9 83,924 - SO0071 0.79 +2.0 83,924 - SO0071 0.79 +0.2 83,974 + SO0071 0.82 -1.7 84,056 + SO0071 0.87 -1.2 84,190 + +0.2 84,219 - +0.3 84,485 + SO0072 0.35 +1.2 84,493 - SO0072 0.38 +0.6 84,547 + SO0072 0.52 -1.8 84,552 + SO0072 0.53 -1.9 84,552 + SO0072 0.53 +1.2 84,552 + SO0072 0.53 +1.4 84,552 + SO0072 0.53 +0.2 84,552 + SO0072 0.53 -0.2 84,552 + SO0072 0.53 -0.4 84,552 + SO0072 0.53 -1.8 84,560 - SO0072 0.56 +1.2 84,560 - SO0072 0.56 +2.2 84,564 + SO0072 0.57 -1.8 84,564 + SO0072 0.57 +1.7 84,672 + SO0072 0.86 -1.9 84,855 + SO0073 0.10 -2.2 84,939 + SO0073 0.20 +1.5 84,946 + SO0073 0.21 +0.8 84,979 - SO0073 0.25 -1.8 84,996 + SO0073 0.27 +1.1 85,012 + SO0073 0.29 +0.2 85,029 + SO0073 0.31 +0.9 85,055 - SO0073 0.34 -1.3 85,141 - SO0073 0.44 +1.2 85,153 + SO0073 0.45 +1.8 85,234 + SO0073 0.54 +1.9 85,234 + SO0073 0.54 -0.2 85,270 + SO0073 0.58 -1.8 85,270 + SO0073 0.58 +2.7 85,270 + SO0073 0.58 +0.1 85,278 - SO0073 0.59 +2.2 85,315 + SO0073 0.64 -1.3 85,368 + SO0073 0.70 -1.3 85,390 + SO0073 0.72 +1.1 85,455 - SO0073 0.80 +0.7 85,488 - SO0073 0.84 -1.9 85,488 - SO0073 0.84 +0.5 85,525 + SO0073 0.88 -0.4 85,552 - +0.9 85,619 + -1.3 85,624 + +1.0 85,632 - -2.7 85,632 - -0.3 85,766 + SO0074 0.11 -1.3 85,923 + SO0074 0.23 +0.8 85,938 + SO0074 0.24 +2.6 85,972 + SO0074 0.27 -0.5 85,972 + SO0074 0.27 +0.3 86,030 + SO0074 0.31 -1.3 86,031 + SO0074 0.31 -0.3 86,053 + SO0074 0.33 +0.5 86,061 - SO0074 0.33 +1.2 86,162 - SO0074 0.41 +2.1 86,199 + SO0074 0.44 +0.3 86,203 + SO0074 0.44 +0.9 86,204 + SO0074 0.44 +0.1 86,212 - SO0074 0.45 -1.4 86,224 + SO0074 0.46 -1.9 86,232 + SO0074 0.46 -2.8 86,234 + SO0074 0.47 -1.7 86,262 + SO0074 0.49 +0.7 86,357 + SO0074 0.56 +1.7 86,365 - SO0074 0.57 +0.5 86,399 + SO0074 0.59 +0.9 86,452 + SO0074 0.63 -0.4 86,552 + SO0074 0.71 +0.6 86,552 + SO0074 0.71 +0.2 86,620 - SO0074 0.76 -0.1 86,620 - SO0074 0.76 +1.2
Or see this region's nucleotide sequence