Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF43224

Experiment: MoLS4 with L-Glutamine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2682 and DORF43224 are separated by 466 nucleotidesDORF43224 and DVU2683 are separated by 144 nucleotides DVU2682: DVU2682 - DedA family protein (TIGR), at 2,795,218 to 2,795,859 DVU2682 DORF43224: DORF43224 - no description, at 2,796,326 to 2,796,499 DORF43224 DVU2683: DVU2683 - L-lactate permease family protein (TIGR), at 2,796,644 to 2,798,194 DVU2683 Position (kb) 2796 2797Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2795.364 kb on - strand, within DVU2682at 2795.389 kb on - strand, within DVU2682at 2795.637 kb on - strand, within DVU2682at 2795.768 kb on + strand, within DVU2682at 2795.911 kb on - strandat 2795.922 kb on + strandat 2795.990 kb on + strandat 2796.030 kb on + strandat 2796.188 kb on + strandat 2796.196 kb on - strandat 2796.260 kb on - strandat 2796.312 kb on + strandat 2796.316 kb on + strandat 2796.335 kb on + strandat 2796.419 kb on - strand, within DORF43224at 2796.421 kb on + strand, within DORF43224at 2796.519 kb on - strandat 2796.536 kb on + strandat 2796.544 kb on - strandat 2796.544 kb on - strandat 2796.643 kb on + strandat 2796.643 kb on + strandat 2796.651 kb on - strandat 2796.661 kb on - strandat 2796.691 kb on - strandat 2796.758 kb on - strandat 2796.781 kb on + strandat 2796.788 kb on + strandat 2796.850 kb on + strand, within DVU2683at 2796.850 kb on + strand, within DVU2683at 2796.858 kb on - strand, within DVU2683at 2796.858 kb on - strand, within DVU2683at 2796.897 kb on - strand, within DVU2683at 2796.936 kb on + strand, within DVU2683at 2796.962 kb on + strand, within DVU2683at 2797.000 kb on + strand, within DVU2683at 2797.102 kb on + strand, within DVU2683at 2797.107 kb on + strand, within DVU2683at 2797.107 kb on + strand, within DVU2683at 2797.107 kb on + strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.135 kb on + strand, within DVU2683at 2797.139 kb on - strand, within DVU2683at 2797.192 kb on + strand, within DVU2683at 2797.200 kb on - strand, within DVU2683at 2797.200 kb on - strand, within DVU2683at 2797.223 kb on - strand, within DVU2683at 2797.223 kb on - strand, within DVU2683at 2797.225 kb on + strand, within DVU2683at 2797.330 kb on + strand, within DVU2683at 2797.338 kb on - strand, within DVU2683at 2797.442 kb on + strand, within DVU2683

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM
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2,795,364 - DVU2682 0.23 +1.0
2,795,389 - DVU2682 0.27 -0.4
2,795,637 - DVU2682 0.65 -0.3
2,795,768 + DVU2682 0.86 -0.8
2,795,911 - +0.1
2,795,922 + +0.0
2,795,990 + +0.0
2,796,030 + -0.9
2,796,188 + -0.0
2,796,196 - -0.4
2,796,260 - -0.8
2,796,312 + -1.0
2,796,316 + -3.9
2,796,335 + -0.1
2,796,419 - DORF43224 0.53 -0.6
2,796,421 + DORF43224 0.55 -2.4
2,796,519 - -0.4
2,796,536 + -2.8
2,796,544 - -0.3
2,796,544 - -0.1
2,796,643 + +0.8
2,796,643 + +0.2
2,796,651 - +0.8
2,796,661 - -0.9
2,796,691 - -0.1
2,796,758 - +0.6
2,796,781 + -0.6
2,796,788 + -3.2
2,796,850 + DVU2683 0.13 -0.3
2,796,850 + DVU2683 0.13 -0.6
2,796,858 - DVU2683 0.14 -0.9
2,796,858 - DVU2683 0.14 -0.3
2,796,897 - DVU2683 0.16 -3.4
2,796,936 + DVU2683 0.19 -0.7
2,796,962 + DVU2683 0.21 -0.3
2,797,000 + DVU2683 0.23 -3.7
2,797,102 + DVU2683 0.30 -0.1
2,797,107 + DVU2683 0.30 -0.3
2,797,107 + DVU2683 0.30 -0.3
2,797,107 + DVU2683 0.30 +3.0
2,797,115 - DVU2683 0.30 -0.1
2,797,115 - DVU2683 0.30 +0.0
2,797,115 - DVU2683 0.30 -2.7
2,797,115 - DVU2683 0.30 +1.2
2,797,115 - DVU2683 0.30 +0.5
2,797,135 + DVU2683 0.32 +0.7
2,797,139 - DVU2683 0.32 -0.6
2,797,192 + DVU2683 0.35 +0.2
2,797,200 - DVU2683 0.36 +0.0
2,797,200 - DVU2683 0.36 +0.1
2,797,223 - DVU2683 0.37 -0.0
2,797,223 - DVU2683 0.37 -0.1
2,797,225 + DVU2683 0.37 -2.5
2,797,330 + DVU2683 0.44 -3.3
2,797,338 - DVU2683 0.45 -0.0
2,797,442 + DVU2683 0.51 -0.7

Or see this region's nucleotide sequence