Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06935

Experiment: Sucrose (C) and Glycine betaine (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose (C) and Glycine betaine (N); with TAPS
1,552,687	+		PFLU_RS06930	0.67	+0.9
1,552,687	+		PFLU_RS06930	0.67	+0.5
1,552,688	-		PFLU_RS06930	0.67	-1.0
1,552,726	+		PFLU_RS06930	0.68	-0.9
1,552,726	+		PFLU_RS06930	0.68	-0.9
1,552,726	+		PFLU_RS06930	0.68	+3.5
1,552,726	+		PFLU_RS06930	0.68	+1.3
1,552,727	-		PFLU_RS06930	0.68	+0.2
1,552,727	-		PFLU_RS06930	0.68	+0.7
1,552,727	-		PFLU_RS06930	0.68	+0.5
1,552,741	+		PFLU_RS06930	0.69	+0.3
1,552,741	+		PFLU_RS06930	0.69	+0.5
1,552,742	-		PFLU_RS06930	0.69	+0.1
1,552,742	-		PFLU_RS06930	0.69	-1.1
1,552,774	+		PFLU_RS06930	0.70	-0.9
1,552,774	+		PFLU_RS06930	0.70	-1.3
1,552,774	+		PFLU_RS06930	0.70	-0.2
1,552,774	+		PFLU_RS06930	0.70	+0.2
1,552,774	+		PFLU_RS06930	0.70	+0.1
1,552,774	+		PFLU_RS06930	0.70	-1.0
1,552,775	-		PFLU_RS06930	0.70	-0.3
1,552,775	-		PFLU_RS06930	0.70	-0.2
1,552,775	-		PFLU_RS06930	0.70	+0.3
1,552,775	-		PFLU_RS06930	0.70	+0.5
1,553,199	+		PFLU_RS06930	0.87	+2.2
1,553,199	+		PFLU_RS06930	0.87	-0.3
1,553,200	-		PFLU_RS06930	0.87	-0.3
1,553,200	-		PFLU_RS06930	0.87	+0.6
1,553,200	-		PFLU_RS06930	0.87	-1.2
1,553,200	-		PFLU_RS06930	0.87	+0.7
1,553,200	-		PFLU_RS06930	0.87	-0.6
1,553,245	-		PFLU_RS06930	0.88	-0.2
1,553,245	-		PFLU_RS06930	0.88	+0.6
1,553,245	-		PFLU_RS06930	0.88	+0.3
1,553,251	+		PFLU_RS06930	0.89	-0.9
1,553,251	+		PFLU_RS06930	0.89	-0.0
1,553,251	+		PFLU_RS06930	0.89	-0.1
1,553,251	+		PFLU_RS06930	0.89	+0.8
1,553,251	+		PFLU_RS06930	0.89	+0.8
1,553,251	+		PFLU_RS06930	0.89	+1.7
1,553,252	-		PFLU_RS06930	0.89	+0.1
1,553,252	-		PFLU_RS06930	0.89	-0.9
1,553,252	-		PFLU_RS06930	0.89	+0.5
1,553,252	-		PFLU_RS06930	0.89	+0.1
1,553,252	-		PFLU_RS06930	0.89	-0.0
1,553,252	-		PFLU_RS06930	0.89	-1.0
1,553,252	-		PFLU_RS06930	0.89	+1.1
1,553,252	-		PFLU_RS06930	0.89	-1.0
1,553,252	-		PFLU_RS06930	0.89	-1.6
1,553,300	+				-1.4
1,553,439	+				+0.7
1,553,439	+				-0.9
1,553,440	-				-1.0
1,553,584	+				-0.0
1,553,584	+				-0.3
1,553,584	+				-0.2
1,553,584	+				+0.5
1,553,584	+				-0.0
1,553,584	+				-0.7
1,553,584	+				-0.5
1,553,584	+				-0.7
1,553,584	+				-0.0
1,553,584	+				-0.1
1,553,584	+				+0.8
1,553,584	+				-1.1
1,553,584	+				+0.6
1,553,585	-				+0.4
1,553,585	-				-1.6
1,553,585	-				-0.5
1,553,585	-				-1.2
1,553,585	-				-1.2
1,553,585	-				-1.2
1,553,585	-				-2.4
1,553,585	-				-1.3
1,553,585	-				-0.4
1,553,585	-				-1.5
1,553,585	-				-0.7
1,553,587	+				+0.2
1,553,587	+				+0.3
1,553,587	+				-0.8
1,553,587	+				-0.2
1,553,587	+				-0.6
1,553,587	+				-0.2
1,553,587	+				-0.3
1,553,587	+				-0.6
1,553,587	+				-0.2
1,553,587	+				-0.2
1,553,588	-				-0.9
1,553,588	-				-0.1
1,553,588	-				-0.7
1,553,588	-				-2.0
1,553,588	-				-1.3
1,553,588	-				-1.0
1,553,588	-				+0.6
1,553,588	-				-0.5
1,553,588	-				-1.3
1,553,588	-				-0.5
1,553,588	-				-1.5
1,553,656	+				-0.7
1,553,656	+				+0.4
1,553,656	+				+0.2
1,553,656	+				+0.4
1,553,656	+				-0.2
1,553,656	+				+0.4
1,553,657	-				-0.5
1,553,657	-				+0.4
1,553,667	-				+0.6
1,553,667	-				+0.5
1,553,673	+				+0.4
1,553,673	+				+1.1
1,553,673	+				-1.1
1,553,673	+				-0.8
1,553,673	+				-0.1
1,553,674	-				-0.7
1,553,674	-				+0.3
1,553,674	-				+0.2
1,553,674	-				-0.6
1,553,693	+				+0.5
1,553,693	+				-0.7
1,553,693	+				-0.5
1,553,694	-				-2.2
1,553,694	-				-2.4
1,553,694	-				-1.7
1,553,694	-				-0.6
1,553,694	-				-2.5
1,553,694	-				-2.6
1,553,771	+		PFLU_RS06935	0.10	+0.0
1,553,771	+		PFLU_RS06935	0.10	-1.3
1,553,771	+		PFLU_RS06935	0.10	+0.3
1,553,772	-		PFLU_RS06935	0.10	-2.1
1,553,772	-		PFLU_RS06935	0.10	-0.1
1,553,772	-		PFLU_RS06935	0.10	-0.8
1,553,772	-		PFLU_RS06935	0.10	-1.3
1,553,772	-		PFLU_RS06935	0.10	-3.3
1,553,772	-		PFLU_RS06935	0.10	-1.4
1,553,841	+		PFLU_RS06935	0.17	-1.1
1,553,842	-		PFLU_RS06935	0.18	-0.1
1,553,842	-		PFLU_RS06935	0.18	-0.5
1,553,961	+		PFLU_RS06935	0.30	-1.5
1,553,961	+		PFLU_RS06935	0.30	-1.1
1,553,962	-		PFLU_RS06935	0.30	-3.2
1,553,967	+		PFLU_RS06935	0.30	-1.5
1,553,967	+		PFLU_RS06935	0.30	-3.2
1,553,968	-		PFLU_RS06935	0.31	-2.0
1,553,968	-		PFLU_RS06935	0.31	-2.1
1,553,968	-		PFLU_RS06935	0.31	-2.8
1,553,968	-		PFLU_RS06935	0.31	-1.3
1,554,165	+		PFLU_RS06935	0.51	+0.9
1,554,165	+		PFLU_RS06935	0.51	+0.2
1,554,165	+		PFLU_RS06935	0.51	-0.6
1,554,165	+		PFLU_RS06935	0.51	-1.7
1,554,165	+		PFLU_RS06935	0.51	-2.4
1,554,165	+		PFLU_RS06935	0.51	-1.6
1,554,165	+		PFLU_RS06935	0.51	-0.2
1,554,165	+		PFLU_RS06935	0.51	-0.5
1,554,165	+		PFLU_RS06935	0.51	-1.4
1,554,166	-		PFLU_RS06935	0.51	-1.7
1,554,166	-		PFLU_RS06935	0.51	+0.2
1,554,166	-		PFLU_RS06935	0.51	-0.6
1,554,166	-		PFLU_RS06935	0.51	+0.2
1,554,166	-		PFLU_RS06935	0.51	-0.7
1,554,166	-		PFLU_RS06935	0.51	-1.7
1,554,201	+		PFLU_RS06935	0.55	-0.6
1,554,201	+		PFLU_RS06935	0.55	-0.3
1,554,243	+		PFLU_RS06935	0.59	-1.5
1,554,243	+		PFLU_RS06935	0.59	-1.1
1,554,243	+		PFLU_RS06935	0.59	-1.3
1,554,243	+		PFLU_RS06935	0.59	-1.8
1,554,243	+		PFLU_RS06935	0.59	-0.2
1,554,243	+		PFLU_RS06935	0.59	-2.6
1,554,243	+		PFLU_RS06935	0.59	-0.1
1,554,243	+		PFLU_RS06935	0.59	-0.9
1,554,243	+		PFLU_RS06935	0.59	-1.4
1,554,243	+		PFLU_RS06935	0.59	+0.3
1,554,243	+		PFLU_RS06935	0.59	+0.3
1,554,243	+		PFLU_RS06935	0.59	-2.9
1,554,243	+		PFLU_RS06935	0.59	-0.4
1,554,243	+		PFLU_RS06935	0.59	-2.7
1,554,243	+		PFLU_RS06935	0.59	-3.1
1,554,243	+		PFLU_RS06935	0.59	-0.4
1,554,243	+		PFLU_RS06935	0.59	-0.7
1,554,243	+		PFLU_RS06935	0.59	-0.5
1,554,243	+		PFLU_RS06935	0.59	+0.5
1,554,243	+		PFLU_RS06935	0.59	-1.6
1,554,243	+		PFLU_RS06935	0.59	-1.1
1,554,243	+		PFLU_RS06935	0.59	-1.4
1,554,243	+		PFLU_RS06935	0.59	-0.7
1,554,243	+		PFLU_RS06935	0.59	-0.5
1,554,243	+		PFLU_RS06935	0.59	-1.2
1,554,243	+		PFLU_RS06935	0.59	-2.0
1,554,243	+		PFLU_RS06935	0.59	-1.5
1,554,243	+		PFLU_RS06935	0.59	-1.7
1,554,243	+		PFLU_RS06935	0.59	-2.1
1,554,243	+		PFLU_RS06935	0.59	-0.7
1,554,243	+		PFLU_RS06935	0.59	+0.1
1,554,243	+		PFLU_RS06935	0.59	-1.7
1,554,243	+		PFLU_RS06935	0.59	-0.4
1,554,243	+		PFLU_RS06935	0.59	-1.0
1,554,243	+		PFLU_RS06935	0.59	-0.9
1,554,243	+		PFLU_RS06935	0.59	+0.8
1,554,244	-		PFLU_RS06935	0.59	-1.3
1,554,244	-		PFLU_RS06935	0.59	-2.0
1,554,244	-		PFLU_RS06935	0.59	+0.0
1,554,244	-		PFLU_RS06935	0.59	-2.8
1,554,244	-		PFLU_RS06935	0.59	-0.2
1,554,244	-		PFLU_RS06935	0.59	+0.9
1,554,244	-		PFLU_RS06935	0.59	-0.6
1,554,244	-		PFLU_RS06935	0.59	+0.3
1,554,244	-		PFLU_RS06935	0.59	-2.1
1,554,244	-		PFLU_RS06935	0.59	+0.3
1,554,244	-		PFLU_RS06935	0.59	-1.6
1,554,244	-		PFLU_RS06935	0.59	-0.9
1,554,244	-		PFLU_RS06935	0.59	-0.4
1,554,244	-		PFLU_RS06935	0.59	-0.8
1,554,244	-		PFLU_RS06935	0.59	-1.7
1,554,244	-		PFLU_RS06935	0.59	-0.8
1,554,244	-		PFLU_RS06935	0.59	-1.4
1,554,244	-		PFLU_RS06935	0.59	-2.0
1,554,244	-		PFLU_RS06935	0.59	-1.4
1,554,244	-		PFLU_RS06935	0.59	+0.4
1,554,244	-		PFLU_RS06935	0.59	-0.9
1,554,312	+		PFLU_RS06935	0.66	-1.9
1,554,312	+		PFLU_RS06935	0.66	-1.2
1,554,312	+		PFLU_RS06935	0.66	-0.3
1,554,312	+		PFLU_RS06935	0.66	-0.1
1,554,312	+		PFLU_RS06935	0.66	+0.0
1,554,312	+		PFLU_RS06935	0.66	+0.0
1,554,312	+		PFLU_RS06935	0.66	-0.8
1,554,312	+		PFLU_RS06935	0.66	-1.3
1,554,312	+		PFLU_RS06935	0.66	-1.2
1,554,312	+		PFLU_RS06935	0.66	-0.7
1,554,313	-		PFLU_RS06935	0.66	+0.5
1,554,313	-		PFLU_RS06935	0.66	-1.0
1,554,313	-		PFLU_RS06935	0.66	+0.4
1,554,313	-		PFLU_RS06935	0.66	-1.5
1,554,313	-		PFLU_RS06935	0.66	-0.2
1,554,480	+		PFLU_RS06935	0.83	-1.3
1,554,480	+		PFLU_RS06935	0.83	-1.0
1,554,481	-		PFLU_RS06935	0.83	-1.9
1,554,481	-		PFLU_RS06935	0.83	+0.0
1,554,786	+		PFLU_RS06940	0.28	-0.2
1,554,786	+		PFLU_RS06940	0.28	+0.7
1,554,786	+		PFLU_RS06940	0.28	-1.4
1,554,787	-		PFLU_RS06940	0.28	+0.7
1,554,787	-		PFLU_RS06940	0.28	+0.1
1,554,787	-		PFLU_RS06940	0.28	-1.7
1,555,047	+		PFLU_RS06940	0.76	-0.4
1,555,047	+		PFLU_RS06940	0.76	+0.3
1,555,048	-		PFLU_RS06940	0.76	-0.9
1,555,048	-		PFLU_RS06940	0.76	+0.7
1,555,048	-		PFLU_RS06940	0.76	+0.4
1,555,109	+		PFLU_RS06940	0.87	+0.9
1,555,110	-		PFLU_RS06940	0.88	-0.2
1,555,110	-		PFLU_RS06940	0.88	-0.2
1,555,116	+		PFLU_RS06940	0.89	+0.1
1,555,116	+		PFLU_RS06940	0.89	-2.0
1,555,116	+		PFLU_RS06940	0.89	-0.2
1,555,116	+		PFLU_RS06940	0.89	+0.9
1,555,116	+		PFLU_RS06940	0.89	+0.3
1,555,116	+		PFLU_RS06940	0.89	-0.2
1,555,116	+		PFLU_RS06940	0.89	-0.0
1,555,116	+		PFLU_RS06940	0.89	+1.3
1,555,116	+		PFLU_RS06940	0.89	+0.3
1,555,116	+		PFLU_RS06940	0.89	-0.0
1,555,117	-		PFLU_RS06940	0.89	-0.9
1,555,117	-		PFLU_RS06940	0.89	-0.3
1,555,117	-		PFLU_RS06940	0.89	+1.8
1,555,117	-		PFLU_RS06940	0.89	-0.9
1,555,122	+		PFLU_RS06940	0.90	+0.3
1,555,122	+		PFLU_RS06940	0.90	+0.4
1,555,123	-				-0.6
1,555,123	-				-0.6
1,555,123	-				-0.3
1,555,123	-				-0.4
1,555,124	+				-1.8
1,555,124	+				+2.3
1,555,125	-				+0.4
1,555,125	-				-0.8
1,555,125	-				-0.2
1,555,248	+				-0.3
1,555,248	+				-1.5
1,555,248	+				+0.5
1,555,249	-				-0.2
1,555,249	-				-0.2
1,555,252	+				+0.2
1,555,252	+				-0.9
1,555,252	+				-0.5
1,555,252	+				+1.8
1,555,252	+				-0.5
1,555,252	+				-0.6
1,555,252	+				+0.8
1,555,253	-				-1.2
1,555,253	-				-1.4
1,555,253	-				-0.3
1,555,253	-				+0.2
1,555,253	-				+0.1
1,555,253	-				+0.2
1,555,253	-				+1.4
1,555,253	-				-0.1
1,555,253	-				+0.8
1,555,253	-				-0.1
1,555,253	-				+0.0
1,555,254	+				+0.8
1,555,254	+				-0.0
1,555,254	+				-0.0
1,555,254	+				+1.1
1,555,255	-				+0.0
1,555,255	-				+1.2
1,555,255	-				+0.9
1,555,255	-				-1.1
1,555,255	-				+0.2
1,555,270	+				-0.4
1,555,485	+		PFLU_RS06945	0.18	+0.2
1,555,485	+		PFLU_RS06945	0.18	-0.3
1,555,485	+		PFLU_RS06945	0.18	-0.3
1,555,485	+		PFLU_RS06945	0.18	-0.0
1,555,485	+		PFLU_RS06945	0.18	+0.4
1,555,486	-		PFLU_RS06945	0.18	-0.6
1,555,486	-		PFLU_RS06945	0.18	-0.2
1,555,533	+		PFLU_RS06945	0.24	-0.2
1,555,533	+		PFLU_RS06945	0.24	-1.0
1,555,533	+		PFLU_RS06945	0.24	-0.7
1,555,533	+		PFLU_RS06945	0.24	-0.6
1,555,533	+		PFLU_RS06945	0.24	+0.7
1,555,533	+		PFLU_RS06945	0.24	+0.2
1,555,533	+		PFLU_RS06945	0.24	+0.9
1,555,534	-		PFLU_RS06945	0.24	-1.2
1,555,534	-		PFLU_RS06945	0.24	-0.4
1,555,534	-		PFLU_RS06945	0.24	-0.1
1,555,635	+		PFLU_RS06945	0.36	+0.1
1,555,635	+		PFLU_RS06945	0.36	+0.2
1,555,635	+		PFLU_RS06945	0.36	+0.0
1,555,635	+		PFLU_RS06945	0.36	-0.8
1,555,635	+		PFLU_RS06945	0.36	-1.4
1,555,636	-		PFLU_RS06945	0.36	+0.2
1,555,636	-		PFLU_RS06945	0.36	+0.1
1,555,636	-		PFLU_RS06945	0.36	-0.4
1,555,636	-		PFLU_RS06945	0.36	-0.1
1,555,636	-		PFLU_RS06945	0.36	+0.3