Experiment: Sucrose (C) and Glycine betaine (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01685 and PFLU_RS01690 overlap by 4 nucleotides PFLU_RS01690 and PFLU_RS01695 are separated by 295 nucleotides PFLU_RS01695 and PFLU_RS01700 are separated by 77 nucleotides
PFLU_RS01685: PFLU_RS01685 - nitrogen regulation protein NR(I), at 374,209 to 375,645
_RS01685
PFLU_RS01690: PFLU_RS01690 - nitrogen regulation protein NR(II), at 375,642 to 376,727
_RS01690
PFLU_RS01695: PFLU_RS01695 - cupin domain-containing protein, at 377,023 to 377,448
_RS01695
PFLU_RS01700: PFLU_RS01700 - chorismate mutase, at 377,526 to 378,062
_RS01700
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 374.721 kb on + strand, within PFLU_RS01685 at 374.722 kb on - strand, within PFLU_RS01685 at 374.722 kb on - strand, within PFLU_RS01685 at 374.858 kb on + strand, within PFLU_RS01685 at 375.341 kb on + strand, within PFLU_RS01685 at 375.341 kb on + strand, within PFLU_RS01685 at 375.342 kb on - strand, within PFLU_RS01685 at 375.342 kb on - strand, within PFLU_RS01685 at 375.342 kb on - strand, within PFLU_RS01685 at 375.362 kb on + strand, within PFLU_RS01685 at 375.362 kb on + strand, within PFLU_RS01685 at 375.362 kb on + strand, within PFLU_RS01685 at 375.363 kb on - strand, within PFLU_RS01685 at 375.600 kb on + strand at 375.600 kb on + strand at 375.601 kb on - strand at 375.601 kb on - strand at 375.601 kb on - strand at 375.986 kb on + strand, within PFLU_RS01690 at 375.987 kb on - strand, within PFLU_RS01690 at 376.026 kb on + strand, within PFLU_RS01690 at 376.026 kb on + strand, within PFLU_RS01690 at 376.026 kb on + strand, within PFLU_RS01690 at 376.026 kb on + strand, within PFLU_RS01690 at 376.026 kb on + strand, within PFLU_RS01690 at 376.026 kb on + strand, within PFLU_RS01690 at 376.027 kb on - strand, within PFLU_RS01690 at 376.027 kb on - strand, within PFLU_RS01690 at 376.027 kb on - strand, within PFLU_RS01690 at 376.027 kb on - strand, within PFLU_RS01690 at 376.027 kb on - strand, within PFLU_RS01690 at 376.048 kb on + strand, within PFLU_RS01690 at 376.049 kb on - strand, within PFLU_RS01690 at 376.174 kb on - strand, within PFLU_RS01690 at 376.174 kb on - strand, within PFLU_RS01690 at 376.219 kb on + strand, within PFLU_RS01690 at 376.219 kb on + strand, within PFLU_RS01690 at 376.219 kb on + strand, within PFLU_RS01690 at 376.219 kb on + strand, within PFLU_RS01690 at 376.219 kb on + strand, within PFLU_RS01690 at 376.219 kb on + strand, within PFLU_RS01690 at 376.219 kb on + strand, within PFLU_RS01690 at 376.219 kb on + strand, within PFLU_RS01690 at 376.220 kb on - strand, within PFLU_RS01690 at 376.220 kb on - strand, within PFLU_RS01690 at 376.220 kb on - strand, within PFLU_RS01690 at 376.220 kb on - strand, within PFLU_RS01690 at 376.220 kb on - strand, within PFLU_RS01690 at 376.220 kb on - strand, within PFLU_RS01690 at 376.220 kb on - strand, within PFLU_RS01690 at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.695 kb on + strand at 376.696 kb on - strand at 376.696 kb on - strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.842 kb on - strand at 376.935 kb on + strand at 376.935 kb on + strand at 376.936 kb on - strand at 376.936 kb on - strand at 376.937 kb on + strand at 376.937 kb on + strand at 376.937 kb on + strand at 376.937 kb on + strand at 376.937 kb on + strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.948 kb on + strand at 376.948 kb on + strand at 376.948 kb on + strand at 376.948 kb on + strand at 376.948 kb on + strand at 377.063 kb on + strand at 377.100 kb on + strand, within PFLU_RS01695 at 377.100 kb on + strand, within PFLU_RS01695 at 377.100 kb on + strand, within PFLU_RS01695 at 377.100 kb on + strand, within PFLU_RS01695 at 377.100 kb on + strand, within PFLU_RS01695 at 377.101 kb on - strand, within PFLU_RS01695 at 377.101 kb on - strand, within PFLU_RS01695 at 377.101 kb on - strand, within PFLU_RS01695 at 377.101 kb on - strand, within PFLU_RS01695 at 377.101 kb on - strand, within PFLU_RS01695 at 377.101 kb on - strand, within PFLU_RS01695 at 377.101 kb on - strand, within PFLU_RS01695 at 377.101 kb on - strand, within PFLU_RS01695 at 377.120 kb on - strand, within PFLU_RS01695 at 377.172 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.208 kb on - strand, within PFLU_RS01695 at 377.208 kb on - strand, within PFLU_RS01695 at 377.208 kb on - strand, within PFLU_RS01695 at 377.208 kb on - strand, within PFLU_RS01695 at 377.208 kb on - strand, within PFLU_RS01695 at 377.208 kb on - strand, within PFLU_RS01695 at 377.208 kb on - strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.273 kb on - strand, within PFLU_RS01695 at 377.273 kb on - strand, within PFLU_RS01695 at 377.273 kb on - strand, within PFLU_RS01695 at 377.273 kb on - strand, within PFLU_RS01695 at 377.303 kb on + strand, within PFLU_RS01695 at 377.304 kb on - strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.368 kb on + strand, within PFLU_RS01695 at 377.369 kb on - strand, within PFLU_RS01695 at 377.369 kb on - strand, within PFLU_RS01695 at 377.369 kb on - strand, within PFLU_RS01695 at 377.369 kb on - strand, within PFLU_RS01695 at 377.369 kb on - strand, within PFLU_RS01695 at 377.466 kb on + strand at 377.484 kb on - strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.709 kb on + strand, within PFLU_RS01700 at 377.709 kb on + strand, within PFLU_RS01700 at 377.709 kb on + strand, within PFLU_RS01700 at 377.709 kb on + strand, within PFLU_RS01700 at 377.709 kb on + strand, within PFLU_RS01700 at 377.709 kb on + strand, within PFLU_RS01700 at 377.710 kb on - strand, within PFLU_RS01700 at 377.710 kb on - strand, within PFLU_RS01700 at 377.710 kb on - strand, within PFLU_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with TAPS remove 374,721 + PFLU_RS01685 0.36 -1.5 374,722 - PFLU_RS01685 0.36 -3.7 374,722 - PFLU_RS01685 0.36 -2.1 374,858 + PFLU_RS01685 0.45 -2.4 375,341 + PFLU_RS01685 0.79 -0.6 375,341 + PFLU_RS01685 0.79 -1.5 375,342 - PFLU_RS01685 0.79 -1.1 375,342 - PFLU_RS01685 0.79 -1.9 375,342 - PFLU_RS01685 0.79 -1.4 375,362 + PFLU_RS01685 0.80 -2.5 375,362 + PFLU_RS01685 0.80 -0.8 375,362 + PFLU_RS01685 0.80 -2.6 375,363 - PFLU_RS01685 0.80 -1.1 375,600 + -1.4 375,600 + -1.4 375,601 - -1.2 375,601 - -1.7 375,601 - -2.2 375,986 + PFLU_RS01690 0.32 -0.7 375,987 - PFLU_RS01690 0.32 -2.4 376,026 + PFLU_RS01690 0.35 -2.4 376,026 + PFLU_RS01690 0.35 -1.0 376,026 + PFLU_RS01690 0.35 -1.5 376,026 + PFLU_RS01690 0.35 -1.2 376,026 + PFLU_RS01690 0.35 -0.3 376,026 + PFLU_RS01690 0.35 -1.5 376,027 - PFLU_RS01690 0.35 -1.9 376,027 - PFLU_RS01690 0.35 -2.1 376,027 - PFLU_RS01690 0.35 -2.2 376,027 - PFLU_RS01690 0.35 -2.9 376,027 - PFLU_RS01690 0.35 -3.4 376,048 + PFLU_RS01690 0.37 -2.5 376,049 - PFLU_RS01690 0.37 -1.9 376,174 - PFLU_RS01690 0.49 -2.9 376,174 - PFLU_RS01690 0.49 -0.5 376,219 + PFLU_RS01690 0.53 -2.1 376,219 + PFLU_RS01690 0.53 -3.5 376,219 + PFLU_RS01690 0.53 -2.0 376,219 + PFLU_RS01690 0.53 -2.2 376,219 + PFLU_RS01690 0.53 -2.3 376,219 + PFLU_RS01690 0.53 -3.5 376,219 + PFLU_RS01690 0.53 -2.6 376,219 + PFLU_RS01690 0.53 -1.6 376,220 - PFLU_RS01690 0.53 -2.6 376,220 - PFLU_RS01690 0.53 -2.6 376,220 - PFLU_RS01690 0.53 -1.5 376,220 - PFLU_RS01690 0.53 -1.1 376,220 - PFLU_RS01690 0.53 -2.7 376,220 - PFLU_RS01690 0.53 -3.3 376,220 - PFLU_RS01690 0.53 -2.9 376,639 + -2.8 376,639 + -1.4 376,639 + -3.1 376,639 + -2.3 376,639 + -2.7 376,639 + -2.0 376,639 + -1.8 376,639 + -0.5 376,639 + -1.5 376,639 + -2.1 376,639 + -0.5 376,639 + -2.5 376,639 + -1.7 376,639 + -2.6 376,639 + -0.1 376,639 + -1.3 376,639 + -2.2 376,639 + -2.5 376,639 + -2.4 376,639 + -2.5 376,640 - -1.2 376,640 - -1.5 376,640 - -2.8 376,640 - -1.9 376,640 - -1.4 376,640 - -1.3 376,640 - -2.9 376,640 - -3.5 376,640 - -1.5 376,640 - -3.6 376,640 - -3.1 376,640 - -2.9 376,640 - -2.6 376,640 - -1.4 376,640 - -1.5 376,640 - -2.3 376,695 + -2.3 376,696 - -2.4 376,696 - +0.6 376,773 + +0.4 376,773 + +0.8 376,773 + -0.4 376,773 + -0.0 376,773 + -0.6 376,773 + +0.2 376,773 + +0.2 376,773 + -1.4 376,773 + +0.2 376,773 + +0.7 376,773 + +0.9 376,773 + +0.2 376,773 + -0.3 376,773 + -0.2 376,773 + +0.6 376,773 + -0.3 376,773 + -1.2 376,773 + -0.9 376,773 + -0.7 376,773 + -0.6 376,774 - -0.8 376,774 - -1.4 376,774 - -1.5 376,774 - -0.1 376,774 - -1.4 376,774 - -1.7 376,774 - -0.1 376,774 - -0.4 376,774 - -0.7 376,774 - -1.0 376,774 - -1.3 376,842 - -0.3 376,935 + -0.4 376,935 + -0.7 376,936 - -1.4 376,936 - +0.1 376,937 + -0.5 376,937 + -1.3 376,937 + +0.1 376,937 + +0.7 376,937 + +0.1 376,938 - -2.2 376,938 - -0.5 376,938 - -1.6 376,938 - -0.2 376,938 - +0.3 376,938 - -0.3 376,938 - +0.5 376,938 - -0.4 376,938 - -0.6 376,948 + -1.4 376,948 + -0.5 376,948 + -1.0 376,948 + +0.7 376,948 + -0.9 377,063 + +0.3 377,100 + PFLU_RS01695 0.18 -0.4 377,100 + PFLU_RS01695 0.18 +0.6 377,100 + PFLU_RS01695 0.18 -0.0 377,100 + PFLU_RS01695 0.18 -0.2 377,100 + PFLU_RS01695 0.18 +1.6 377,101 - PFLU_RS01695 0.18 -0.0 377,101 - PFLU_RS01695 0.18 +0.1 377,101 - PFLU_RS01695 0.18 -0.4 377,101 - PFLU_RS01695 0.18 +0.1 377,101 - PFLU_RS01695 0.18 +2.6 377,101 - PFLU_RS01695 0.18 -0.3 377,101 - PFLU_RS01695 0.18 +0.6 377,101 - PFLU_RS01695 0.18 -1.4 377,120 - PFLU_RS01695 0.23 -0.3 377,172 + PFLU_RS01695 0.35 -0.5 377,207 + PFLU_RS01695 0.43 +1.5 377,207 + PFLU_RS01695 0.43 -0.6 377,207 + PFLU_RS01695 0.43 +2.8 377,207 + PFLU_RS01695 0.43 -1.2 377,207 + PFLU_RS01695 0.43 +0.8 377,207 + PFLU_RS01695 0.43 +1.0 377,207 + PFLU_RS01695 0.43 +0.6 377,207 + PFLU_RS01695 0.43 -0.7 377,208 - PFLU_RS01695 0.43 -0.1 377,208 - PFLU_RS01695 0.43 +0.5 377,208 - PFLU_RS01695 0.43 -0.5 377,208 - PFLU_RS01695 0.43 -0.4 377,208 - PFLU_RS01695 0.43 +0.3 377,208 - PFLU_RS01695 0.43 +0.7 377,208 - PFLU_RS01695 0.43 +1.0 377,272 + PFLU_RS01695 0.58 -0.1 377,272 + PFLU_RS01695 0.58 +0.7 377,272 + PFLU_RS01695 0.58 +0.2 377,272 + PFLU_RS01695 0.58 -0.6 377,272 + PFLU_RS01695 0.58 +0.6 377,272 + PFLU_RS01695 0.58 +0.2 377,273 - PFLU_RS01695 0.59 -0.2 377,273 - PFLU_RS01695 0.59 +1.2 377,273 - PFLU_RS01695 0.59 +1.3 377,273 - PFLU_RS01695 0.59 -0.6 377,303 + PFLU_RS01695 0.66 -0.4 377,304 - PFLU_RS01695 0.66 -0.4 377,312 + PFLU_RS01695 0.68 +0.4 377,312 + PFLU_RS01695 0.68 -1.7 377,312 + PFLU_RS01695 0.68 -1.5 377,312 + PFLU_RS01695 0.68 -0.2 377,312 + PFLU_RS01695 0.68 -0.5 377,313 - PFLU_RS01695 0.68 -0.0 377,313 - PFLU_RS01695 0.68 -0.8 377,313 - PFLU_RS01695 0.68 +0.7 377,313 - PFLU_RS01695 0.68 -0.7 377,313 - PFLU_RS01695 0.68 -1.2 377,313 - PFLU_RS01695 0.68 +0.1 377,313 - PFLU_RS01695 0.68 -0.2 377,313 - PFLU_RS01695 0.68 -0.1 377,313 - PFLU_RS01695 0.68 +0.7 377,313 - PFLU_RS01695 0.68 -0.4 377,368 + PFLU_RS01695 0.81 +0.0 377,369 - PFLU_RS01695 0.81 -0.2 377,369 - PFLU_RS01695 0.81 -0.2 377,369 - PFLU_RS01695 0.81 -0.1 377,369 - PFLU_RS01695 0.81 +0.5 377,369 - PFLU_RS01695 0.81 +1.8 377,466 + +0.1 377,484 - +0.3 377,531 + -1.3 377,531 + -0.6 377,531 + +0.8 377,531 + -0.0 377,531 + -0.2 377,531 + +0.2 377,531 + -0.7 377,531 + +0.5 377,531 + +0.2 377,532 - -0.3 377,532 - +0.6 377,532 - +0.8 377,532 - +0.1 377,532 - +0.6 377,532 - -0.6 377,532 - +0.9 377,709 + PFLU_RS01700 0.34 -0.5 377,709 + PFLU_RS01700 0.34 -0.4 377,709 + PFLU_RS01700 0.34 +0.6 377,709 + PFLU_RS01700 0.34 -1.1 377,709 + PFLU_RS01700 0.34 -0.5 377,709 + PFLU_RS01700 0.34 +0.0 377,710 - PFLU_RS01700 0.34 +0.9 377,710 - PFLU_RS01700 0.34 -0.1 377,710 - PFLU_RS01700 0.34 -0.2
Or see this region's nucleotide sequence