Experiment: MoLS4 with L-Glutamine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0037 and b0983 overlap by 1 nucleotides b0983 and DVUA0039 are separated by 0 nucleotides DVUA0039 and DVUA0040 are separated by 10 nucleotides
DVUA0037: DVUA0037 - sugar transferase domain protein (TIGR), at 44,190 to 45,644
DVUA0037
DVUA0038: b0983 - capsular polysaccharide transport protein (TIGR), at 45,644 to 46,450
b0983
DVUA0039: DVUA0039 - chain length determinant family protein (TIGR), at 46,451 to 47,953
DVUA0039
DVUA0040: DVUA0040 - polysaccharide biosynthesis protein, putative (TIGR), at 47,964 to 49,082
DVUA0040
Position (kb) 46
47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 45.704 kb on - strand at 45.804 kb on + strand, within b0983 at 45.812 kb on - strand, within b0983 at 45.842 kb on + strand, within b0983 at 45.842 kb on + strand, within b0983 at 45.850 kb on - strand, within b0983 at 45.859 kb on + strand, within b0983 at 45.860 kb on + strand, within b0983 at 45.901 kb on - strand, within b0983 at 45.960 kb on + strand, within b0983 at 46.093 kb on - strand, within b0983 at 46.227 kb on + strand, within b0983 at 46.234 kb on - strand, within b0983 at 46.243 kb on + strand, within b0983 at 46.245 kb on + strand, within b0983 at 46.250 kb on + strand, within b0983 at 46.267 kb on + strand, within b0983 at 46.280 kb on + strand, within b0983 at 46.345 kb on + strand, within b0983 at 46.574 kb on - strand at 46.577 kb on + strand at 46.587 kb on + strand at 46.632 kb on + strand, within DVUA0039 at 46.669 kb on + strand, within DVUA0039 at 46.677 kb on - strand, within DVUA0039 at 46.716 kb on + strand, within DVUA0039 at 46.724 kb on - strand, within DVUA0039 at 46.732 kb on - strand, within DVUA0039 at 46.732 kb on - strand, within DVUA0039 at 46.732 kb on - strand, within DVUA0039 at 46.740 kb on + strand, within DVUA0039 at 46.809 kb on - strand, within DVUA0039 at 46.855 kb on + strand, within DVUA0039 at 46.855 kb on + strand, within DVUA0039 at 46.948 kb on + strand, within DVUA0039 at 46.956 kb on - strand, within DVUA0039 at 47.034 kb on - strand, within DVUA0039 at 47.134 kb on - strand, within DVUA0039 at 47.251 kb on + strand, within DVUA0039 at 47.391 kb on + strand, within DVUA0039 at 47.456 kb on + strand, within DVUA0039 at 47.456 kb on + strand, within DVUA0039 at 47.635 kb on - strand, within DVUA0039 at 47.687 kb on + strand, within DVUA0039 at 47.699 kb on - strand, within DVUA0039 at 47.732 kb on + strand, within DVUA0039 at 47.741 kb on - strand, within DVUA0039 at 47.772 kb on - strand, within DVUA0039 at 47.857 kb on + strand at 47.900 kb on - strand at 47.912 kb on + strand at 48.047 kb on + strand at 48.047 kb on + strand at 48.047 kb on + strand at 48.055 kb on - strand at 48.100 kb on + strand, within DVUA0040 at 48.100 kb on + strand, within DVUA0040 at 48.100 kb on + strand, within DVUA0040 at 48.100 kb on + strand, within DVUA0040 at 48.108 kb on - strand, within DVUA0040 at 48.108 kb on - strand, within DVUA0040 at 48.108 kb on - strand, within DVUA0040 at 48.108 kb on - strand, within DVUA0040 at 48.108 kb on - strand, within DVUA0040 at 48.108 kb on - strand, within DVUA0040 at 48.158 kb on - strand, within DVUA0040 at 48.320 kb on + strand, within DVUA0040 at 48.320 kb on + strand, within DVUA0040 at 48.328 kb on - strand, within DVUA0040 at 48.356 kb on + strand, within DVUA0040 at 48.382 kb on - strand, within DVUA0040 at 48.392 kb on - strand, within DVUA0040 at 48.433 kb on - strand, within DVUA0040 at 48.468 kb on + strand, within DVUA0040 at 48.585 kb on - strand, within DVUA0040 at 48.642 kb on - strand, within DVUA0040 at 48.696 kb on - strand, within DVUA0040 at 48.729 kb on + strand, within DVUA0040 at 48.792 kb on - strand, within DVUA0040 at 48.794 kb on + strand, within DVUA0040 at 48.944 kb on - strand, within DVUA0040
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM remove 45,704 - +0.0 45,804 + b0983 DVUA0038 0.20 +0.3 45,812 - b0983 DVUA0038 0.21 +0.3 45,842 + b0983 DVUA0038 0.25 -0.1 45,842 + b0983 DVUA0038 0.25 +0.2 45,850 - b0983 DVUA0038 0.26 -3.5 45,859 + b0983 DVUA0038 0.27 -0.2 45,860 + b0983 DVUA0038 0.27 -0.4 45,901 - b0983 DVUA0038 0.32 -0.4 45,960 + b0983 DVUA0038 0.39 -0.1 46,093 - b0983 DVUA0038 0.56 +0.3 46,227 + b0983 DVUA0038 0.72 +0.5 46,234 - b0983 DVUA0038 0.73 -1.0 46,243 + b0983 DVUA0038 0.74 -0.6 46,245 + b0983 DVUA0038 0.74 -0.0 46,250 + b0983 DVUA0038 0.75 -3.8 46,267 + b0983 DVUA0038 0.77 -0.0 46,280 + b0983 DVUA0038 0.79 +0.0 46,345 + b0983 DVUA0038 0.87 -0.1 46,574 - -0.4 46,577 + -0.8 46,587 + -4.4 46,632 + DVUA0039 0.12 -2.5 46,669 + DVUA0039 0.15 +1.2 46,677 - DVUA0039 0.15 -0.4 46,716 + DVUA0039 0.18 -3.5 46,724 - DVUA0039 0.18 +0.2 46,732 - DVUA0039 0.19 +0.0 46,732 - DVUA0039 0.19 -0.5 46,732 - DVUA0039 0.19 -0.6 46,740 + DVUA0039 0.19 -0.2 46,809 - DVUA0039 0.24 +0.8 46,855 + DVUA0039 0.27 +0.5 46,855 + DVUA0039 0.27 -0.3 46,948 + DVUA0039 0.33 +0.1 46,956 - DVUA0039 0.34 -0.1 47,034 - DVUA0039 0.39 +1.0 47,134 - DVUA0039 0.45 +0.6 47,251 + DVUA0039 0.53 -0.1 47,391 + DVUA0039 0.63 -0.1 47,456 + DVUA0039 0.67 -0.7 47,456 + DVUA0039 0.67 -0.2 47,635 - DVUA0039 0.79 -0.0 47,687 + DVUA0039 0.82 +0.2 47,699 - DVUA0039 0.83 +0.9 47,732 + DVUA0039 0.85 -0.0 47,741 - DVUA0039 0.86 +0.6 47,772 - DVUA0039 0.88 -3.0 47,857 + -0.0 47,900 - -1.0 47,912 + +0.1 48,047 + -0.1 48,047 + +0.0 48,047 + -0.2 48,055 - -1.6 48,100 + DVUA0040 0.12 +2.6 48,100 + DVUA0040 0.12 -1.0 48,100 + DVUA0040 0.12 +0.2 48,100 + DVUA0040 0.12 -0.3 48,108 - DVUA0040 0.13 +0.4 48,108 - DVUA0040 0.13 -0.5 48,108 - DVUA0040 0.13 -0.3 48,108 - DVUA0040 0.13 -0.0 48,108 - DVUA0040 0.13 -0.6 48,108 - DVUA0040 0.13 +0.5 48,158 - DVUA0040 0.17 +2.2 48,320 + DVUA0040 0.32 +0.1 48,320 + DVUA0040 0.32 -3.4 48,328 - DVUA0040 0.33 -3.4 48,356 + DVUA0040 0.35 +2.4 48,382 - DVUA0040 0.37 +0.0 48,392 - DVUA0040 0.38 +0.0 48,433 - DVUA0040 0.42 -0.1 48,468 + DVUA0040 0.45 +0.3 48,585 - DVUA0040 0.55 -0.3 48,642 - DVUA0040 0.61 +0.0 48,696 - DVUA0040 0.65 +0.3 48,729 + DVUA0040 0.68 -0.5 48,792 - DVUA0040 0.74 -3.9 48,794 + DVUA0040 0.74 -0.4 48,944 - DVUA0040 0.88 +0.0
Or see this region's nucleotide sequence