Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2372

Experiment: MoLS4 with L-Glutamine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntamiA and DVU2372 are separated by 4 nucleotidesDVU2372 and DVU2373 are separated by 101 nucleotides DVU2371: amiA - N-acetylmuramoyl-L-alanine amidase, putative (TIGR), at 2,466,461 to 2,468,092 amiA DVU2372: DVU2372 - hypothetical protein (TIGR), at 2,468,097 to 2,468,462 DVU2372 DVU2373: DVU2373 - outer membrane protein, OMP85 family (TIGR), at 2,468,564 to 2,471,254 DVU2373 Position (kb) 2468 2469Strain fitness (log2 ratio) -3 -2 -1 0 1at 2468.196 kb on + strand, within DVU2372at 2468.219 kb on + strand, within DVU2372at 2468.275 kb on + strand, within DVU2372at 2468.283 kb on - strand, within DVU2372at 2468.317 kb on - strand, within DVU2372at 2468.327 kb on - strand, within DVU2372at 2468.327 kb on - strand, within DVU2372at 2468.347 kb on - strand, within DVU2372at 2468.400 kb on + strand, within DVU2372at 2468.415 kb on + strand, within DVU2372at 2468.462 kb on + strandat 2468.494 kb on + strandat 2468.502 kb on - strandat 2468.516 kb on + strandat 2468.539 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine as nutrient 10mM
remove
2,468,196 + DVU2372 0.27 +0.3
2,468,219 + DVU2372 0.33 -3.0
2,468,275 + DVU2372 0.49 -1.2
2,468,283 - DVU2372 0.51 +0.1
2,468,317 - DVU2372 0.60 -0.5
2,468,327 - DVU2372 0.63 +0.2
2,468,327 - DVU2372 0.63 +0.7
2,468,347 - DVU2372 0.68 -0.6
2,468,400 + DVU2372 0.83 -1.9
2,468,415 + DVU2372 0.87 -0.5
2,468,462 + -3.1
2,468,494 + -0.1
2,468,502 - -0.2
2,468,516 + -2.9
2,468,539 - -0.6

Or see this region's nucleotide sequence