Strain Fitness in Shewanella oneidensis MR-1 around SO0491

Experiment: LB; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0490 and SO0491 are separated by 471 nucleotidesSO0491 and SO0492 are separated by 137 nucleotidesSO0492 and SO0493 are separated by 73 nucleotides SO0490: SO0490 - transcriptional regulator (NCBI ptt file), at 512,737 to 514,020 SO0490 SO0491: SO0491 - peptidase, M13 family (NCBI ptt file), at 514,492 to 516,627 SO0491 SO0492: SO0492 - hypothetical flavoprotein oxygenases (NCBI ptt file), at 516,765 to 517,394 SO0492 SO0493: SO0493 - hypothetical protein (NCBI ptt file), at 517,468 to 517,599 SO0493 Position (kb) 514 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 513.532 kb on + strand, within SO0490at 513.646 kb on + strand, within SO0490at 513.649 kb on - strand, within SO0490at 513.656 kb on - strand, within SO0490at 513.690 kb on + strand, within SO0490at 513.715 kb on + strand, within SO0490at 513.715 kb on + strand, within SO0490at 513.725 kb on + strand, within SO0490at 513.761 kb on + strand, within SO0490at 513.769 kb on - strand, within SO0490at 513.837 kb on + strand, within SO0490at 513.845 kb on - strand, within SO0490at 513.845 kb on - strand, within SO0490at 514.084 kb on - strandat 514.084 kb on - strandat 514.084 kb on - strandat 514.150 kb on - strandat 514.160 kb on - strandat 514.231 kb on + strandat 514.257 kb on - strandat 514.418 kb on + strandat 514.492 kb on + strandat 514.500 kb on - strandat 514.514 kb on + strandat 514.524 kb on + strandat 514.542 kb on - strandat 514.614 kb on + strandat 514.614 kb on + strandat 514.617 kb on - strandat 514.641 kb on + strandat 514.649 kb on - strandat 514.656 kb on - strandat 514.661 kb on + strandat 514.661 kb on + strandat 514.707 kb on + strand, within SO0491at 514.750 kb on - strand, within SO0491at 514.809 kb on + strand, within SO0491at 514.810 kb on + strand, within SO0491at 514.810 kb on + strand, within SO0491at 514.817 kb on - strand, within SO0491at 514.844 kb on - strand, within SO0491at 514.862 kb on + strand, within SO0491at 514.862 kb on + strand, within SO0491at 514.862 kb on + strand, within SO0491at 515.011 kb on - strand, within SO0491at 515.020 kb on + strand, within SO0491at 515.020 kb on + strand, within SO0491at 515.020 kb on + strand, within SO0491at 515.020 kb on + strand, within SO0491at 515.028 kb on - strand, within SO0491at 515.028 kb on - strand, within SO0491at 515.093 kb on - strand, within SO0491at 515.103 kb on - strand, within SO0491at 515.132 kb on + strand, within SO0491at 515.190 kb on + strand, within SO0491at 515.198 kb on - strand, within SO0491at 515.317 kb on - strand, within SO0491at 515.347 kb on + strand, within SO0491at 515.347 kb on + strand, within SO0491at 515.347 kb on + strand, within SO0491at 515.355 kb on - strand, within SO0491at 515.370 kb on - strand, within SO0491at 515.446 kb on + strand, within SO0491at 515.494 kb on - strand, within SO0491at 515.494 kb on - strand, within SO0491at 515.516 kb on + strand, within SO0491at 515.548 kb on - strand, within SO0491at 515.602 kb on - strand, within SO0491at 515.612 kb on + strand, within SO0491at 515.612 kb on + strand, within SO0491at 515.612 kb on + strand, within SO0491at 515.620 kb on - strand, within SO0491at 515.620 kb on - strand, within SO0491at 515.620 kb on - strand, within SO0491at 515.685 kb on + strand, within SO0491at 515.700 kb on + strand, within SO0491at 515.708 kb on - strand, within SO0491at 515.820 kb on + strand, within SO0491at 515.828 kb on - strand, within SO0491at 515.844 kb on + strand, within SO0491at 515.938 kb on + strand, within SO0491at 515.979 kb on - strand, within SO0491at 516.510 kb on - strandat 516.527 kb on + strandat 516.542 kb on + strandat 516.542 kb on + strandat 516.555 kb on + strandat 516.591 kb on + strandat 516.628 kb on + strandat 516.636 kb on - strandat 516.636 kb on - strandat 516.636 kb on - strandat 516.636 kb on - strandat 516.636 kb on - strandat 516.636 kb on - strandat 516.716 kb on - strandat 516.812 kb on - strandat 516.950 kb on - strand, within SO0492at 516.986 kb on - strand, within SO0492at 517.124 kb on + strand, within SO0492at 517.129 kb on + strand, within SO0492at 517.150 kb on - strand, within SO0492at 517.199 kb on + strand, within SO0492at 517.230 kb on + strand, within SO0492at 517.230 kb on + strand, within SO0492at 517.230 kb on + strand, within SO0492at 517.230 kb on + strand, within SO0492at 517.238 kb on - strand, within SO0492at 517.238 kb on - strand, within SO0492at 517.388 kb on + strandat 517.388 kb on + strandat 517.389 kb on - strandat 517.396 kb on - strandat 517.396 kb on - strandat 517.396 kb on - strandat 517.412 kb on + strandat 517.415 kb on - strandat 517.421 kb on + strandat 517.436 kb on + strandat 517.444 kb on - strandat 517.460 kb on - strandat 517.594 kb on + strandat 517.627 kb on + strandat 517.627 kb on + strandat 517.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic
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513,532 + SO0490 0.62 +1.1
513,646 + SO0490 0.71 +0.4
513,649 - SO0490 0.71 +0.1
513,656 - SO0490 0.72 +0.7
513,690 + SO0490 0.74 +1.5
513,715 + SO0490 0.76 +0.2
513,715 + SO0490 0.76 +1.7
513,725 + SO0490 0.77 +0.8
513,761 + SO0490 0.80 -0.9
513,769 - SO0490 0.80 -2.7
513,837 + SO0490 0.86 -1.0
513,845 - SO0490 0.86 -1.3
513,845 - SO0490 0.86 -0.6
514,084 - +0.7
514,084 - -1.0
514,084 - +0.8
514,150 - +0.8
514,160 - +0.9
514,231 + -2.8
514,257 - -0.7
514,418 + +0.7
514,492 + -2.9
514,500 - +0.1
514,514 + -0.3
514,524 + -0.5
514,542 - +1.4
514,614 + +1.0
514,614 + -0.0
514,617 - +0.8
514,641 + -0.8
514,649 - +0.4
514,656 - -1.7
514,661 + -0.8
514,661 + +1.5
514,707 + SO0491 0.10 -0.4
514,750 - SO0491 0.12 -1.2
514,809 + SO0491 0.15 -1.5
514,810 + SO0491 0.15 -1.1
514,810 + SO0491 0.15 -2.1
514,817 - SO0491 0.15 -2.9
514,844 - SO0491 0.16 +0.5
514,862 + SO0491 0.17 -2.2
514,862 + SO0491 0.17 -1.9
514,862 + SO0491 0.17 +0.6
515,011 - SO0491 0.24 -0.6
515,020 + SO0491 0.25 -0.3
515,020 + SO0491 0.25 -1.7
515,020 + SO0491 0.25 +0.2
515,020 + SO0491 0.25 -1.3
515,028 - SO0491 0.25 -2.0
515,028 - SO0491 0.25 -1.1
515,093 - SO0491 0.28 -0.3
515,103 - SO0491 0.29 -2.1
515,132 + SO0491 0.30 -0.2
515,190 + SO0491 0.33 -1.7
515,198 - SO0491 0.33 +0.9
515,317 - SO0491 0.39 +1.3
515,347 + SO0491 0.40 +0.8
515,347 + SO0491 0.40 -0.6
515,347 + SO0491 0.40 +0.7
515,355 - SO0491 0.40 +1.1
515,370 - SO0491 0.41 +1.5
515,446 + SO0491 0.45 +0.6
515,494 - SO0491 0.47 +0.1
515,494 - SO0491 0.47 +0.1
515,516 + SO0491 0.48 -0.5
515,548 - SO0491 0.49 -0.7
515,602 - SO0491 0.52 -0.6
515,612 + SO0491 0.52 -1.4
515,612 + SO0491 0.52 -0.5
515,612 + SO0491 0.52 -0.7
515,620 - SO0491 0.53 -2.6
515,620 - SO0491 0.53 -1.7
515,620 - SO0491 0.53 -2.1
515,685 + SO0491 0.56 -1.3
515,700 + SO0491 0.57 -1.2
515,708 - SO0491 0.57 -1.1
515,820 + SO0491 0.62 +0.4
515,828 - SO0491 0.63 -1.3
515,844 + SO0491 0.63 -1.6
515,938 + SO0491 0.68 -0.2
515,979 - SO0491 0.70 -0.0
516,510 - +0.5
516,527 + +0.0
516,542 + -0.1
516,542 + -2.2
516,555 + -0.1
516,591 + -1.8
516,628 + -1.6
516,636 - -1.9
516,636 - -0.3
516,636 - -0.9
516,636 - -1.6
516,636 - +0.5
516,636 - -1.1
516,716 - +1.8
516,812 - -0.7
516,950 - SO0492 0.29 -0.3
516,986 - SO0492 0.35 +0.3
517,124 + SO0492 0.57 -0.7
517,129 + SO0492 0.58 -1.0
517,150 - SO0492 0.61 +0.5
517,199 + SO0492 0.69 +0.3
517,230 + SO0492 0.74 -1.9
517,230 + SO0492 0.74 +1.1
517,230 + SO0492 0.74 +1.0
517,230 + SO0492 0.74 -0.5
517,238 - SO0492 0.75 -0.7
517,238 - SO0492 0.75 -0.9
517,388 + +1.0
517,388 + -0.5
517,389 - -1.9
517,396 - -0.3
517,396 - -0.0
517,396 - +1.4
517,412 + -1.5
517,415 - +1.4
517,421 + -1.5
517,436 + -0.4
517,444 - -1.9
517,460 - -2.1
517,594 + +0.4
517,627 + +1.0
517,627 + +1.5
517,627 + -1.1

Or see this region's nucleotide sequence