Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0365 and SO0366 are separated by 15 nucleotides SO0366 and SO0367 are separated by 304 nucleotides
SO0365: SO0365 - hypothetical permeases of the major facilitator superfamily (NCBI ptt file), at 375,687 to 377,111
SO0365
SO0366: SO0366 - hypothetical protein (NCBI ptt file), at 377,127 to 377,945
SO0366
SO0367: SO0367 - conserved hypothetical protein (NCBI ptt file), at 378,250 to 379,365
SO0367
Position (kb) 377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 376.186 kb on + strand, within SO0365 at 376.215 kb on + strand, within SO0365 at 376.215 kb on + strand, within SO0365 at 376.263 kb on - strand, within SO0365 at 376.327 kb on + strand, within SO0365 at 376.327 kb on + strand, within SO0365 at 376.327 kb on + strand, within SO0365 at 376.632 kb on + strand, within SO0365 at 376.728 kb on - strand, within SO0365 at 376.781 kb on + strand, within SO0365 at 376.786 kb on + strand, within SO0365 at 376.808 kb on - strand, within SO0365 at 376.890 kb on - strand, within SO0365 at 376.970 kb on - strand at 376.974 kb on - strand at 376.979 kb on - strand at 376.989 kb on - strand at 377.012 kb on - strand at 377.074 kb on + strand at 377.161 kb on + strand at 377.222 kb on - strand, within SO0366 at 377.227 kb on - strand, within SO0366 at 377.230 kb on + strand, within SO0366 at 377.230 kb on + strand, within SO0366 at 377.230 kb on + strand, within SO0366 at 377.238 kb on - strand, within SO0366 at 377.238 kb on - strand, within SO0366 at 377.444 kb on + strand, within SO0366 at 377.452 kb on - strand, within SO0366 at 377.467 kb on + strand, within SO0366 at 377.504 kb on + strand, within SO0366 at 377.689 kb on - strand, within SO0366 at 377.733 kb on + strand, within SO0366 at 377.830 kb on + strand, within SO0366 at 377.882 kb on + strand at 377.894 kb on + strand at 377.946 kb on + strand at 377.949 kb on - strand at 377.954 kb on - strand at 377.956 kb on + strand at 377.958 kb on + strand at 377.958 kb on + strand at 377.960 kb on + strand at 378.038 kb on - strand at 378.038 kb on - strand at 378.047 kb on + strand at 378.047 kb on + strand at 378.047 kb on + strand at 378.055 kb on - strand at 378.142 kb on - strand at 378.304 kb on + strand at 378.384 kb on + strand, within SO0367 at 378.384 kb on + strand, within SO0367 at 378.417 kb on + strand, within SO0367 at 378.464 kb on - strand, within SO0367 at 378.482 kb on - strand, within SO0367 at 378.530 kb on - strand, within SO0367 at 378.530 kb on - strand, within SO0367 at 378.554 kb on + strand, within SO0367 at 378.589 kb on + strand, within SO0367 at 378.606 kb on + strand, within SO0367 at 378.614 kb on - strand, within SO0367 at 378.647 kb on - strand, within SO0367 at 378.649 kb on - strand, within SO0367 at 378.649 kb on - strand, within SO0367 at 378.649 kb on - strand, within SO0367 at 378.651 kb on + strand, within SO0367 at 378.659 kb on - strand, within SO0367 at 378.689 kb on + strand, within SO0367 at 378.699 kb on + strand, within SO0367 at 378.699 kb on + strand, within SO0367 at 378.707 kb on - strand, within SO0367 at 378.852 kb on + strand, within SO0367 at 378.887 kb on + strand, within SO0367
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 376,186 + SO0365 0.35 -0.2 376,215 + SO0365 0.37 -1.6 376,215 + SO0365 0.37 +0.7 376,263 - SO0365 0.40 -0.4 376,327 + SO0365 0.45 -2.6 376,327 + SO0365 0.45 -1.4 376,327 + SO0365 0.45 -1.0 376,632 + SO0365 0.66 -1.4 376,728 - SO0365 0.73 -0.7 376,781 + SO0365 0.77 +1.1 376,786 + SO0365 0.77 -1.5 376,808 - SO0365 0.79 +0.7 376,890 - SO0365 0.84 -2.2 376,970 - -1.4 376,974 - +0.1 376,979 - -2.5 376,989 - +0.2 377,012 - +0.5 377,074 + -2.0 377,161 + +0.4 377,222 - SO0366 0.12 -0.3 377,227 - SO0366 0.12 -0.9 377,230 + SO0366 0.13 +2.1 377,230 + SO0366 0.13 -0.2 377,230 + SO0366 0.13 +1.3 377,238 - SO0366 0.14 -0.0 377,238 - SO0366 0.14 -0.9 377,444 + SO0366 0.39 +5.1 377,452 - SO0366 0.40 +1.2 377,467 + SO0366 0.42 +1.5 377,504 + SO0366 0.46 -3.0 377,689 - SO0366 0.69 -0.5 377,733 + SO0366 0.74 +0.4 377,830 + SO0366 0.86 +0.9 377,882 + +1.2 377,894 + -1.6 377,946 + +1.1 377,949 - -0.6 377,954 - +0.3 377,956 + +0.2 377,958 + -1.4 377,958 + +0.2 377,960 + -0.1 378,038 - +0.6 378,038 - +1.1 378,047 + +0.1 378,047 + -0.4 378,047 + -0.2 378,055 - -0.2 378,142 - +0.3 378,304 + +1.6 378,384 + SO0367 0.12 +0.1 378,384 + SO0367 0.12 -1.2 378,417 + SO0367 0.15 +0.3 378,464 - SO0367 0.19 +0.6 378,482 - SO0367 0.21 +1.0 378,530 - SO0367 0.25 -1.0 378,530 - SO0367 0.25 -0.0 378,554 + SO0367 0.27 +0.1 378,589 + SO0367 0.30 +1.0 378,606 + SO0367 0.32 +0.1 378,614 - SO0367 0.33 +0.3 378,647 - SO0367 0.36 -0.1 378,649 - SO0367 0.36 -0.5 378,649 - SO0367 0.36 -0.7 378,649 - SO0367 0.36 +0.6 378,651 + SO0367 0.36 -0.1 378,659 - SO0367 0.37 -3.1 378,689 + SO0367 0.39 -0.1 378,699 + SO0367 0.40 +1.2 378,699 + SO0367 0.40 +0.5 378,707 - SO0367 0.41 -0.9 378,852 + SO0367 0.54 +1.3 378,887 + SO0367 0.57 -0.1
Or see this region's nucleotide sequence