Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepQ and SO0023 are separated by 15 nucleotides SO0023 and trkH-1 are separated by 77 nucleotides
SO0022: pepQ - prolidase (NCBI ptt file), at 27,069 to 28,388
pepQ
SO0023: SO0023 - conserved hypothetical protein TIGR00257 (NCBI ptt file), at 28,404 to 29,018
SO0023
SO0024: trkH-1 - potassium uptake protein TrkH (NCBI ptt file), at 29,096 to 30,556
trkH-1
Position (kb) 28
29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 27.461 kb on + strand, within pepQ at 27.463 kb on + strand, within pepQ at 27.469 kb on - strand, within pepQ at 27.471 kb on - strand, within pepQ at 27.670 kb on - strand, within pepQ at 27.681 kb on - strand, within pepQ at 27.683 kb on + strand, within pepQ at 27.751 kb on - strand, within pepQ at 27.751 kb on - strand, within pepQ at 27.762 kb on - strand, within pepQ at 27.764 kb on + strand, within pepQ at 27.834 kb on - strand, within pepQ at 27.850 kb on - strand, within pepQ at 27.873 kb on + strand, within pepQ at 27.883 kb on - strand, within pepQ at 27.885 kb on + strand, within pepQ at 27.885 kb on + strand, within pepQ at 27.885 kb on + strand, within pepQ at 27.893 kb on - strand, within pepQ at 27.893 kb on - strand, within pepQ at 27.893 kb on - strand, within pepQ at 27.898 kb on - strand, within pepQ at 27.919 kb on - strand, within pepQ at 27.998 kb on - strand, within pepQ at 28.014 kb on + strand, within pepQ at 28.014 kb on + strand, within pepQ at 28.014 kb on + strand, within pepQ at 28.014 kb on + strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.071 kb on - strand, within pepQ at 28.074 kb on + strand, within pepQ at 28.111 kb on + strand, within pepQ at 28.137 kb on - strand, within pepQ at 28.141 kb on + strand, within pepQ at 28.212 kb on + strand, within pepQ at 28.293 kb on - strand at 28.303 kb on - strand at 28.354 kb on - strand at 28.388 kb on + strand at 28.414 kb on - strand at 28.414 kb on - strand at 28.417 kb on + strand at 28.458 kb on + strand at 28.463 kb on - strand at 28.469 kb on + strand, within SO0023 at 28.498 kb on + strand, within SO0023 at 28.538 kb on + strand, within SO0023 at 28.617 kb on - strand, within SO0023 at 28.647 kb on + strand, within SO0023 at 28.688 kb on + strand, within SO0023 at 28.698 kb on + strand, within SO0023 at 28.720 kb on + strand, within SO0023 at 28.728 kb on - strand, within SO0023 at 28.740 kb on + strand, within SO0023 at 28.759 kb on + strand, within SO0023 at 28.759 kb on + strand, within SO0023 at 28.759 kb on + strand, within SO0023 at 28.764 kb on + strand, within SO0023 at 28.778 kb on - strand, within SO0023 at 28.814 kb on - strand, within SO0023 at 28.962 kb on + strand at 28.965 kb on + strand at 28.977 kb on + strand at 28.977 kb on + strand at 28.977 kb on + strand at 28.977 kb on + strand at 28.983 kb on + strand at 28.985 kb on - strand at 28.986 kb on - strand at 28.991 kb on - strand at 29.005 kb on + strand at 29.005 kb on + strand at 29.096 kb on + strand at 29.096 kb on + strand at 29.143 kb on + strand at 29.251 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.330 kb on + strand, within trkH-1 at 29.330 kb on + strand, within trkH-1 at 29.330 kb on + strand, within trkH-1 at 29.338 kb on - strand, within trkH-1 at 29.338 kb on - strand, within trkH-1 at 29.338 kb on - strand, within trkH-1 at 29.378 kb on + strand, within trkH-1 at 29.422 kb on + strand, within trkH-1 at 29.430 kb on - strand, within trkH-1 at 29.430 kb on - strand, within trkH-1 at 29.435 kb on - strand, within trkH-1 at 29.452 kb on - strand, within trkH-1 at 29.458 kb on + strand, within trkH-1 at 29.458 kb on - strand, within trkH-1 at 29.549 kb on + strand, within trkH-1 at 29.580 kb on - strand, within trkH-1 at 29.627 kb on - strand, within trkH-1 at 29.652 kb on - strand, within trkH-1 at 29.858 kb on - strand, within trkH-1 at 29.886 kb on + strand, within trkH-1 at 29.904 kb on + strand, within trkH-1 at 29.912 kb on - strand, within trkH-1 at 29.919 kb on + strand, within trkH-1 at 30.015 kb on + strand, within trkH-1
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 27,461 + pepQ SO0022 0.30 -0.1 27,463 + pepQ SO0022 0.30 -1.1 27,469 - pepQ SO0022 0.30 +0.1 27,471 - pepQ SO0022 0.30 -0.7 27,670 - pepQ SO0022 0.46 +0.3 27,681 - pepQ SO0022 0.46 +2.3 27,683 + pepQ SO0022 0.47 -0.8 27,751 - pepQ SO0022 0.52 +1.5 27,751 - pepQ SO0022 0.52 -1.9 27,762 - pepQ SO0022 0.53 +0.5 27,764 + pepQ SO0022 0.53 +0.8 27,834 - pepQ SO0022 0.58 +1.0 27,850 - pepQ SO0022 0.59 +1.2 27,873 + pepQ SO0022 0.61 -1.0 27,883 - pepQ SO0022 0.62 +0.4 27,885 + pepQ SO0022 0.62 -0.7 27,885 + pepQ SO0022 0.62 +1.2 27,885 + pepQ SO0022 0.62 +0.6 27,893 - pepQ SO0022 0.62 +0.2 27,893 - pepQ SO0022 0.62 +0.4 27,893 - pepQ SO0022 0.62 -2.6 27,898 - pepQ SO0022 0.63 -1.3 27,919 - pepQ SO0022 0.64 +0.8 27,998 - pepQ SO0022 0.70 -2.0 28,014 + pepQ SO0022 0.72 -1.7 28,014 + pepQ SO0022 0.72 +0.6 28,014 + pepQ SO0022 0.72 -0.7 28,014 + pepQ SO0022 0.72 +0.1 28,022 - pepQ SO0022 0.72 +1.3 28,022 - pepQ SO0022 0.72 +0.6 28,022 - pepQ SO0022 0.72 -0.2 28,022 - pepQ SO0022 0.72 +1.8 28,022 - pepQ SO0022 0.72 +0.2 28,022 - pepQ SO0022 0.72 +0.9 28,022 - pepQ SO0022 0.72 +0.6 28,022 - pepQ SO0022 0.72 +0.9 28,022 - pepQ SO0022 0.72 +1.1 28,022 - pepQ SO0022 0.72 +0.7 28,071 - pepQ SO0022 0.76 +1.0 28,074 + pepQ SO0022 0.76 +1.4 28,111 + pepQ SO0022 0.79 +0.5 28,137 - pepQ SO0022 0.81 +0.1 28,141 + pepQ SO0022 0.81 -1.0 28,212 + pepQ SO0022 0.87 -0.6 28,293 - -1.8 28,303 - -1.0 28,354 - +0.3 28,388 + +0.7 28,414 - +1.9 28,414 - -0.5 28,417 + +0.2 28,458 + -1.7 28,463 - -0.4 28,469 + SO0023 0.11 +0.5 28,498 + SO0023 0.15 -0.5 28,538 + SO0023 0.22 -1.1 28,617 - SO0023 0.35 -3.4 28,647 + SO0023 0.40 -1.9 28,688 + SO0023 0.46 -2.5 28,698 + SO0023 0.48 +0.7 28,720 + SO0023 0.51 -0.8 28,728 - SO0023 0.53 -1.0 28,740 + SO0023 0.55 +1.5 28,759 + SO0023 0.58 -0.2 28,759 + SO0023 0.58 -0.5 28,759 + SO0023 0.58 -2.3 28,764 + SO0023 0.59 -0.4 28,778 - SO0023 0.61 -0.1 28,814 - SO0023 0.67 -4.0 28,962 + -1.3 28,965 + -1.2 28,977 + +2.5 28,977 + +1.8 28,977 + -0.8 28,977 + +0.7 28,983 + +0.4 28,985 - +0.1 28,986 - -0.9 28,991 - +0.1 29,005 + -0.2 29,005 + +0.5 29,096 + -0.4 29,096 + +0.5 29,143 + -1.8 29,251 + trkH-1 SO0024 0.11 +0.3 29,320 + trkH-1 SO0024 0.15 +0.9 29,320 + trkH-1 SO0024 0.15 +1.4 29,320 + trkH-1 SO0024 0.15 -1.7 29,320 + trkH-1 SO0024 0.15 +3.5 29,320 + trkH-1 SO0024 0.15 +0.4 29,320 + trkH-1 SO0024 0.15 -3.0 29,328 - trkH-1 SO0024 0.16 +0.6 29,328 - trkH-1 SO0024 0.16 -0.3 29,328 - trkH-1 SO0024 0.16 +0.1 29,328 - trkH-1 SO0024 0.16 -1.2 29,328 - trkH-1 SO0024 0.16 +1.1 29,328 - trkH-1 SO0024 0.16 +1.5 29,330 + trkH-1 SO0024 0.16 -0.2 29,330 + trkH-1 SO0024 0.16 +0.4 29,330 + trkH-1 SO0024 0.16 +0.6 29,338 - trkH-1 SO0024 0.17 -0.2 29,338 - trkH-1 SO0024 0.17 +1.0 29,338 - trkH-1 SO0024 0.17 +0.6 29,378 + trkH-1 SO0024 0.19 +0.9 29,422 + trkH-1 SO0024 0.22 -0.1 29,430 - trkH-1 SO0024 0.23 +1.2 29,430 - trkH-1 SO0024 0.23 +0.5 29,435 - trkH-1 SO0024 0.23 -0.2 29,452 - trkH-1 SO0024 0.24 +0.9 29,458 + trkH-1 SO0024 0.25 -0.3 29,458 - trkH-1 SO0024 0.25 -0.2 29,549 + trkH-1 SO0024 0.31 -0.5 29,580 - trkH-1 SO0024 0.33 +3.2 29,627 - trkH-1 SO0024 0.36 -0.2 29,652 - trkH-1 SO0024 0.38 -0.8 29,858 - trkH-1 SO0024 0.52 -0.3 29,886 + trkH-1 SO0024 0.54 -1.4 29,904 + trkH-1 SO0024 0.55 -2.0 29,912 - trkH-1 SO0024 0.56 -2.4 29,919 + trkH-1 SO0024 0.56 +0.8 30,015 + trkH-1 SO0024 0.63 -2.2
Or see this region's nucleotide sequence