Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07800

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07780 and PGA1_c07790 are separated by 23 nucleotidesPGA1_c07790 and PGA1_c07800 are separated by 128 nucleotidesPGA1_c07800 and PGA1_c07810 are separated by 232 nucleotides PGA1_c07780: PGA1_c07780 - TRAP transporter, subunit DctP, at 805,111 to 806,256 _c07780 PGA1_c07790: PGA1_c07790 - hypothetical protein, at 806,280 to 806,465 _c07790 PGA1_c07800: PGA1_c07800 - putative transcriptional regulator, lacI family, at 806,594 to 807,619 _c07800 PGA1_c07810: PGA1_c07810 - aminotransferase class-III, at 807,852 to 809,225 _c07810 Position (kb) 806 807 808Strain fitness (log2 ratio) -2 -1 0 1 2at 805.685 kb on + strand, within PGA1_c07780at 805.726 kb on + strand, within PGA1_c07780at 805.726 kb on + strand, within PGA1_c07780at 805.734 kb on - strand, within PGA1_c07780at 805.762 kb on - strand, within PGA1_c07780at 805.767 kb on + strand, within PGA1_c07780at 805.767 kb on + strand, within PGA1_c07780at 805.812 kb on + strand, within PGA1_c07780at 805.820 kb on - strand, within PGA1_c07780at 805.825 kb on + strand, within PGA1_c07780at 805.835 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.858 kb on + strand, within PGA1_c07780at 805.903 kb on - strand, within PGA1_c07780at 805.904 kb on - strand, within PGA1_c07780at 805.907 kb on - strand, within PGA1_c07780at 805.950 kb on - strand, within PGA1_c07780at 806.047 kb on + strand, within PGA1_c07780at 806.047 kb on + strand, within PGA1_c07780at 806.053 kb on - strand, within PGA1_c07780at 806.055 kb on + strandat 806.063 kb on - strand, within PGA1_c07780at 806.070 kb on + strand, within PGA1_c07780at 806.101 kb on - strand, within PGA1_c07780at 806.136 kb on + strand, within PGA1_c07780at 806.141 kb on + strand, within PGA1_c07780at 806.141 kb on + strand, within PGA1_c07780at 806.141 kb on + strand, within PGA1_c07780at 806.143 kb on + strandat 806.144 kb on - strandat 806.153 kb on + strandat 806.167 kb on + strandat 806.172 kb on + strandat 806.172 kb on + strandat 806.180 kb on - strandat 806.425 kb on - strand, within PGA1_c07790at 806.447 kb on - strandat 806.449 kb on + strandat 806.479 kb on - strandat 806.586 kb on + strandat 806.638 kb on + strandat 806.638 kb on - strandat 806.658 kb on + strandat 806.663 kb on + strandat 806.663 kb on + strandat 806.663 kb on + strandat 806.663 kb on + strandat 806.787 kb on + strand, within PGA1_c07800at 806.818 kb on + strand, within PGA1_c07800at 806.841 kb on + strand, within PGA1_c07800at 806.841 kb on + strand, within PGA1_c07800at 806.851 kb on - strand, within PGA1_c07800at 806.851 kb on - strand, within PGA1_c07800at 806.877 kb on + strand, within PGA1_c07800at 806.877 kb on + strand, within PGA1_c07800at 806.901 kb on - strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.910 kb on + strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.918 kb on - strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.927 kb on + strand, within PGA1_c07800at 806.932 kb on + strand, within PGA1_c07800at 806.935 kb on - strand, within PGA1_c07800at 806.960 kb on + strand, within PGA1_c07800at 806.982 kb on - strand, within PGA1_c07800at 807.032 kb on - strand, within PGA1_c07800at 807.081 kb on - strand, within PGA1_c07800at 807.264 kb on + strand, within PGA1_c07800at 807.305 kb on - strand, within PGA1_c07800at 807.322 kb on + strand, within PGA1_c07800at 807.388 kb on - strand, within PGA1_c07800at 807.434 kb on - strand, within PGA1_c07800at 807.551 kb on - strandat 807.568 kb on - strandat 807.568 kb on - strandat 807.570 kb on + strandat 807.686 kb on + strandat 807.694 kb on - strandat 807.732 kb on + strandat 807.740 kb on - strandat 807.740 kb on - strandat 807.771 kb on + strandat 807.773 kb on + strandat 807.800 kb on + strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.808 kb on - strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.834 kb on + strandat 807.842 kb on - strandat 807.891 kb on + strandat 807.904 kb on + strandat 807.976 kb on + strandat 808.038 kb on - strand, within PGA1_c07810at 808.041 kb on + strand, within PGA1_c07810at 808.049 kb on - strand, within PGA1_c07810at 808.049 kb on - strand, within PGA1_c07810at 808.049 kb on - strand, within PGA1_c07810at 808.077 kb on + strand, within PGA1_c07810at 808.116 kb on + strand, within PGA1_c07810at 808.116 kb on + strand, within PGA1_c07810at 808.123 kb on + strand, within PGA1_c07810at 808.131 kb on - strand, within PGA1_c07810at 808.131 kb on - strand, within PGA1_c07810at 808.133 kb on + strand, within PGA1_c07810at 808.135 kb on + strand, within PGA1_c07810at 808.142 kb on - strand, within PGA1_c07810at 808.170 kb on + strand, within PGA1_c07810at 808.189 kb on - strand, within PGA1_c07810at 808.212 kb on + strand, within PGA1_c07810at 808.246 kb on - strand, within PGA1_c07810at 808.305 kb on - strand, within PGA1_c07810at 808.312 kb on + strand, within PGA1_c07810at 808.312 kb on + strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.325 kb on - strand, within PGA1_c07810at 808.342 kb on + strand, within PGA1_c07810at 808.350 kb on - strand, within PGA1_c07810at 808.396 kb on - strand, within PGA1_c07810at 808.420 kb on + strand, within PGA1_c07810at 808.420 kb on + strand, within PGA1_c07810at 808.441 kb on + strand, within PGA1_c07810at 808.458 kb on - strand, within PGA1_c07810at 808.507 kb on - strand, within PGA1_c07810at 808.515 kb on + strand, within PGA1_c07810at 808.533 kb on + strand, within PGA1_c07810at 808.543 kb on + strand, within PGA1_c07810

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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805,685 + PGA1_c07780 0.50 +1.0
805,726 + PGA1_c07780 0.54 -1.1
805,726 + PGA1_c07780 0.54 +0.0
805,734 - PGA1_c07780 0.54 -1.5
805,762 - PGA1_c07780 0.57 -0.3
805,767 + PGA1_c07780 0.57 +1.3
805,767 + PGA1_c07780 0.57 -1.2
805,812 + PGA1_c07780 0.61 +0.5
805,820 - PGA1_c07780 0.62 -1.4
805,825 + PGA1_c07780 0.62 -0.3
805,835 + PGA1_c07780 0.63 +0.4
805,845 + PGA1_c07780 0.64 +0.8
805,845 + PGA1_c07780 0.64 -0.6
805,845 + PGA1_c07780 0.64 -0.7
805,845 + PGA1_c07780 0.64 +0.8
805,845 + PGA1_c07780 0.64 +0.2
805,845 + PGA1_c07780 0.64 -1.6
805,845 + PGA1_c07780 0.64 -0.6
805,853 - PGA1_c07780 0.65 -0.6
805,853 - PGA1_c07780 0.65 +1.1
805,853 - PGA1_c07780 0.65 -0.0
805,853 - PGA1_c07780 0.65 +0.8
805,858 + PGA1_c07780 0.65 -0.1
805,903 - PGA1_c07780 0.69 +2.5
805,904 - PGA1_c07780 0.69 +1.5
805,907 - PGA1_c07780 0.69 -0.9
805,950 - PGA1_c07780 0.73 +0.7
806,047 + PGA1_c07780 0.82 +0.3
806,047 + PGA1_c07780 0.82 +0.0
806,053 - PGA1_c07780 0.82 +0.5
806,055 + -1.5
806,063 - PGA1_c07780 0.83 +0.7
806,070 + PGA1_c07780 0.84 +0.2
806,101 - PGA1_c07780 0.86 -2.3
806,136 + PGA1_c07780 0.89 -1.2
806,141 + PGA1_c07780 0.90 -0.7
806,141 + PGA1_c07780 0.90 -0.9
806,141 + PGA1_c07780 0.90 -0.1
806,143 + +1.2
806,144 - +0.8
806,153 + -0.1
806,167 + -0.7
806,172 + -1.1
806,172 + +1.1
806,180 - -0.6
806,425 - PGA1_c07790 0.78 +0.3
806,447 - +1.6
806,449 + -0.8
806,479 - +1.7
806,586 + +0.3
806,638 + +0.0
806,638 - +0.7
806,658 + -0.2
806,663 + +1.0
806,663 + -0.7
806,663 + -0.5
806,663 + -0.9
806,787 + PGA1_c07800 0.19 +0.9
806,818 + PGA1_c07800 0.22 +1.2
806,841 + PGA1_c07800 0.24 +1.1
806,841 + PGA1_c07800 0.24 +0.1
806,851 - PGA1_c07800 0.25 +0.3
806,851 - PGA1_c07800 0.25 -1.1
806,877 + PGA1_c07800 0.28 +0.2
806,877 + PGA1_c07800 0.28 +2.7
806,901 - PGA1_c07800 0.30 +1.4
806,910 + PGA1_c07800 0.31 +0.4
806,910 + PGA1_c07800 0.31 -1.0
806,910 + PGA1_c07800 0.31 +0.3
806,910 + PGA1_c07800 0.31 +0.6
806,910 + PGA1_c07800 0.31 +2.0
806,918 - PGA1_c07800 0.32 +0.9
806,918 - PGA1_c07800 0.32 +0.9
806,918 - PGA1_c07800 0.32 +0.6
806,927 + PGA1_c07800 0.32 +0.1
806,927 + PGA1_c07800 0.32 +1.0
806,927 + PGA1_c07800 0.32 +1.0
806,932 + PGA1_c07800 0.33 +1.2
806,935 - PGA1_c07800 0.33 -0.1
806,960 + PGA1_c07800 0.36 +0.1
806,982 - PGA1_c07800 0.38 +2.2
807,032 - PGA1_c07800 0.43 -0.4
807,081 - PGA1_c07800 0.47 -0.3
807,264 + PGA1_c07800 0.65 +1.2
807,305 - PGA1_c07800 0.69 +0.9
807,322 + PGA1_c07800 0.71 +0.9
807,388 - PGA1_c07800 0.77 +0.3
807,434 - PGA1_c07800 0.82 -0.0
807,551 - +1.7
807,568 - -0.4
807,568 - +0.2
807,570 + -0.1
807,686 + +1.1
807,694 - +0.1
807,732 + +1.3
807,740 - -1.5
807,740 - +1.9
807,771 + -0.3
807,773 + +2.3
807,800 + +1.0
807,808 - +0.0
807,808 - +0.2
807,808 - -0.4
807,808 - -0.6
807,808 - -0.5
807,808 - +1.9
807,834 + -0.8
807,834 + -0.3
807,834 + -1.6
807,834 + -0.3
807,834 + -0.0
807,834 + +0.7
807,842 - -1.4
807,891 + -0.4
807,904 + +0.2
807,976 + +0.3
808,038 - PGA1_c07810 0.14 -0.9
808,041 + PGA1_c07810 0.14 +0.1
808,049 - PGA1_c07810 0.14 -0.1
808,049 - PGA1_c07810 0.14 +2.0
808,049 - PGA1_c07810 0.14 -0.3
808,077 + PGA1_c07810 0.16 -0.0
808,116 + PGA1_c07810 0.19 +0.4
808,116 + PGA1_c07810 0.19 -0.0
808,123 + PGA1_c07810 0.20 +2.3
808,131 - PGA1_c07810 0.20 -0.9
808,131 - PGA1_c07810 0.20 +0.7
808,133 + PGA1_c07810 0.20 +0.7
808,135 + PGA1_c07810 0.21 -0.3
808,142 - PGA1_c07810 0.21 -0.3
808,170 + PGA1_c07810 0.23 +0.7
808,189 - PGA1_c07810 0.25 +0.4
808,212 + PGA1_c07810 0.26 +0.3
808,246 - PGA1_c07810 0.29 +0.7
808,305 - PGA1_c07810 0.33 +0.3
808,312 + PGA1_c07810 0.33 -0.2
808,312 + PGA1_c07810 0.33 -0.0
808,320 - PGA1_c07810 0.34 +0.0
808,320 - PGA1_c07810 0.34 -0.8
808,320 - PGA1_c07810 0.34 -1.3
808,320 - PGA1_c07810 0.34 -0.2
808,325 - PGA1_c07810 0.34 -0.4
808,342 + PGA1_c07810 0.36 -0.2
808,350 - PGA1_c07810 0.36 +0.7
808,396 - PGA1_c07810 0.40 +1.3
808,420 + PGA1_c07810 0.41 -0.0
808,420 + PGA1_c07810 0.41 +1.4
808,441 + PGA1_c07810 0.43 -0.6
808,458 - PGA1_c07810 0.44 +0.5
808,507 - PGA1_c07810 0.48 +0.3
808,515 + PGA1_c07810 0.48 -0.3
808,533 + PGA1_c07810 0.50 +1.4
808,543 + PGA1_c07810 0.50 -0.6

Or see this region's nucleotide sequence