Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00240

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00230 and PGA1_262p00240 are separated by 126 nucleotidesPGA1_262p00240 and PGA1_262p00250 are separated by 41 nucleotidesPGA1_262p00250 and PGA1_262p00260 are separated by 109 nucleotides PGA1_262p00230: PGA1_262p00230 - betaine aldehyde dehydrogenase BetB, at 27,589 to 29,073 _262p00230 PGA1_262p00240: PGA1_262p00240 - Protein of unknown function (DUF1289)., at 29,200 to 29,445 _262p00240 PGA1_262p00250: PGA1_262p00250 - ferritin-like protein, at 29,487 to 29,960 _262p00250 PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510 _262p00260 Position (kb) 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 28.312 kb on + strand, within PGA1_262p00230at 28.334 kb on + strand, within PGA1_262p00230at 28.336 kb on - strand, within PGA1_262p00230at 28.352 kb on + strand, within PGA1_262p00230at 28.366 kb on + strand, within PGA1_262p00230at 28.373 kb on + strand, within PGA1_262p00230at 28.438 kb on - strand, within PGA1_262p00230at 28.639 kb on + strand, within PGA1_262p00230at 28.698 kb on - strand, within PGA1_262p00230at 28.743 kb on + strand, within PGA1_262p00230at 28.818 kb on + strand, within PGA1_262p00230at 28.913 kb on - strand, within PGA1_262p00230at 28.913 kb on - strand, within PGA1_262p00230at 28.942 kb on + strandat 28.943 kb on - strandat 28.964 kb on + strandat 29.088 kb on - strandat 29.153 kb on - strandat 29.174 kb on - strandat 29.230 kb on - strand, within PGA1_262p00240at 29.230 kb on - strand, within PGA1_262p00240at 29.230 kb on - strand, within PGA1_262p00240at 29.250 kb on + strand, within PGA1_262p00240at 29.348 kb on + strand, within PGA1_262p00240at 29.380 kb on + strand, within PGA1_262p00240at 29.484 kb on + strandat 29.484 kb on + strandat 29.484 kb on + strandat 29.492 kb on - strandat 29.492 kb on - strandat 29.632 kb on + strand, within PGA1_262p00250at 29.733 kb on + strand, within PGA1_262p00250at 29.897 kb on + strand, within PGA1_262p00250at 29.901 kb on - strand, within PGA1_262p00250at 29.906 kb on - strand, within PGA1_262p00250at 29.954 kb on + strandat 30.013 kb on + strandat 30.022 kb on - strandat 30.032 kb on - strandat 30.047 kb on + strandat 30.140 kb on + strand, within PGA1_262p00260at 30.142 kb on - strand, within PGA1_262p00260at 30.169 kb on + strand, within PGA1_262p00260at 30.177 kb on - strand, within PGA1_262p00260at 30.178 kb on - strand, within PGA1_262p00260at 30.232 kb on - strand, within PGA1_262p00260at 30.268 kb on + strand, within PGA1_262p00260at 30.268 kb on + strand, within PGA1_262p00260at 30.268 kb on + strand, within PGA1_262p00260at 30.283 kb on - strand, within PGA1_262p00260at 30.343 kb on - strand, within PGA1_262p00260at 30.402 kb on + strand, within PGA1_262p00260

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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28,312 + PGA1_262p00230 0.49 +1.3
28,334 + PGA1_262p00230 0.50 -0.6
28,336 - PGA1_262p00230 0.50 -0.7
28,352 + PGA1_262p00230 0.51 +0.7
28,366 + PGA1_262p00230 0.52 -0.7
28,373 + PGA1_262p00230 0.53 -1.9
28,438 - PGA1_262p00230 0.57 +0.5
28,639 + PGA1_262p00230 0.71 +0.1
28,698 - PGA1_262p00230 0.75 -0.4
28,743 + PGA1_262p00230 0.78 +0.1
28,818 + PGA1_262p00230 0.83 -0.1
28,913 - PGA1_262p00230 0.89 -0.5
28,913 - PGA1_262p00230 0.89 +0.7
28,942 + -2.1
28,943 - -1.3
28,964 + -1.8
29,088 - -1.0
29,153 - -0.7
29,174 - -1.3
29,230 - PGA1_262p00240 0.12 -0.8
29,230 - PGA1_262p00240 0.12 -0.2
29,230 - PGA1_262p00240 0.12 +1.0
29,250 + PGA1_262p00240 0.20 -1.2
29,348 + PGA1_262p00240 0.60 -1.6
29,380 + PGA1_262p00240 0.73 +1.5
29,484 + -0.6
29,484 + +0.1
29,484 + -0.7
29,492 - -0.9
29,492 - +0.5
29,632 + PGA1_262p00250 0.31 -0.3
29,733 + PGA1_262p00250 0.52 -0.4
29,897 + PGA1_262p00250 0.86 -0.9
29,901 - PGA1_262p00250 0.87 -0.9
29,906 - PGA1_262p00250 0.88 -2.3
29,954 + +0.3
30,013 + -0.4
30,022 - +0.4
30,032 - +0.3
30,047 + -2.2
30,140 + PGA1_262p00260 0.16 -2.2
30,142 - PGA1_262p00260 0.16 +0.9
30,169 + PGA1_262p00260 0.22 -0.5
30,177 - PGA1_262p00260 0.24 +1.5
30,178 - PGA1_262p00260 0.24 +1.5
30,232 - PGA1_262p00260 0.37 +2.0
30,268 + PGA1_262p00260 0.45 +0.0
30,268 + PGA1_262p00260 0.45 -0.5
30,268 + PGA1_262p00260 0.45 +0.7
30,283 - PGA1_262p00260 0.48 +1.0
30,343 - PGA1_262p00260 0.62 -0.2
30,402 + PGA1_262p00260 0.75 +0.4

Or see this region's nucleotide sequence