Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27965

Experiment: D-Glucose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS27960 and BWI76_RS27965 are separated by 109 nucleotides BWI76_RS27960: BWI76_RS27960 - alcohol dehydrogenase protein, at 5,798,035 to 5,799,060 _RS27960 BWI76_RS27965: BWI76_RS27965 - LysR family transcriptional regulator, at 5,799,170 to 5,800,105 _RS27965 Position (kb) 5799 5800 5801Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5798.318 kb on - strand, within BWI76_RS27960at 5798.396 kb on - strand, within BWI76_RS27960at 5798.396 kb on - strand, within BWI76_RS27960at 5798.410 kb on - strand, within BWI76_RS27960at 5798.579 kb on + strand, within BWI76_RS27960at 5798.612 kb on + strand, within BWI76_RS27960at 5798.617 kb on + strand, within BWI76_RS27960at 5798.624 kb on + strand, within BWI76_RS27960at 5798.632 kb on - strand, within BWI76_RS27960at 5798.927 kb on + strand, within BWI76_RS27960at 5798.960 kb on - strandat 5799.048 kb on - strandat 5799.174 kb on + strandat 5799.336 kb on + strand, within BWI76_RS27965at 5799.344 kb on - strand, within BWI76_RS27965at 5799.592 kb on - strand, within BWI76_RS27965at 5799.592 kb on - strand, within BWI76_RS27965at 5799.614 kb on + strand, within BWI76_RS27965at 5799.660 kb on + strand, within BWI76_RS27965at 5799.668 kb on - strand, within BWI76_RS27965at 5799.694 kb on + strand, within BWI76_RS27965at 5799.707 kb on + strand, within BWI76_RS27965at 5799.810 kb on + strand, within BWI76_RS27965at 5799.810 kb on + strand, within BWI76_RS27965at 5799.818 kb on - strand, within BWI76_RS27965at 5799.995 kb on - strand, within BWI76_RS27965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
remove
5,798,318 - BWI76_RS27960 0.28 -0.2
5,798,396 - BWI76_RS27960 0.35 +0.6
5,798,396 - BWI76_RS27960 0.35 -0.2
5,798,410 - BWI76_RS27960 0.37 +0.6
5,798,579 + BWI76_RS27960 0.53 -0.0
5,798,612 + BWI76_RS27960 0.56 +0.2
5,798,617 + BWI76_RS27960 0.57 +1.5
5,798,624 + BWI76_RS27960 0.57 -0.6
5,798,632 - BWI76_RS27960 0.58 +0.4
5,798,927 + BWI76_RS27960 0.87 -0.2
5,798,960 - +0.8
5,799,048 - -0.1
5,799,174 + +0.5
5,799,336 + BWI76_RS27965 0.18 -1.3
5,799,344 - BWI76_RS27965 0.19 -0.8
5,799,592 - BWI76_RS27965 0.45 -0.3
5,799,592 - BWI76_RS27965 0.45 -1.9
5,799,614 + BWI76_RS27965 0.47 +0.5
5,799,660 + BWI76_RS27965 0.52 +0.3
5,799,668 - BWI76_RS27965 0.53 -1.7
5,799,694 + BWI76_RS27965 0.56 +0.5
5,799,707 + BWI76_RS27965 0.57 +0.2
5,799,810 + BWI76_RS27965 0.68 -2.6
5,799,810 + BWI76_RS27965 0.68 +3.1
5,799,818 - BWI76_RS27965 0.69 -1.4
5,799,995 - BWI76_RS27965 0.88 -0.8

Or see this region's nucleotide sequence