Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sp23SB and Sp5SB are separated by 203 nucleotides Sp5SB and SO0208.1 are separated by 417 nucleotides SO0208.1 and SO0211 are separated by 22 nucleotides SO0211 and murB are separated by 277 nucleotides
SO_r005: Sp23SB - 23S ribosomal RNA (RefSeq), at 218,957 to 221,849
Sp23SB
SO_r006: Sp5SB - 5S ribosomal RNA (RefSeq), at 222,053 to 222,172
Sp5SB
SO0208.1: SO0208.1 - putative transposase (NCBI ptt file), at 222,590 to 222,898
SO0208.1
SO0211: SO0211 - ISSod10, transposase OrfA (NCBI ptt file), at 222,921 to 223,361
SO0211
SO0213: murB - UDP-N-acetylenolpyruvoylglucosamine reductase (NCBI ptt file), at 223,639 to 224,664
murB
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 222.481 kb on + strand at 222.633 kb on + strand, within SO0208.1 at 222.879 kb on - strand at 222.938 kb on + strand at 223.002 kb on - strand, within SO0211 at 223.045 kb on - strand, within SO0211 at 223.076 kb on - strand, within SO0211 at 223.098 kb on - strand, within SO0211 at 223.100 kb on + strand, within SO0211 at 223.100 kb on + strand, within SO0211 at 223.108 kb on - strand, within SO0211 at 223.170 kb on + strand, within SO0211 at 223.170 kb on + strand, within SO0211 at 223.170 kb on + strand, within SO0211 at 223.224 kb on + strand, within SO0211 at 223.243 kb on - strand, within SO0211 at 223.289 kb on + strand, within SO0211 at 223.289 kb on + strand, within SO0211 at 223.297 kb on - strand, within SO0211 at 223.422 kb on + strand at 223.424 kb on - strand at 223.465 kb on + strand at 223.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 222,481 + +0.5 222,633 + SO0208.1 0.14 -1.7 222,879 - +1.1 222,938 + -1.4 223,002 - SO0211 0.18 +0.1 223,045 - SO0211 0.28 +1.9 223,076 - SO0211 0.35 -0.2 223,098 - SO0211 0.40 -0.9 223,100 + SO0211 0.41 -0.1 223,100 + SO0211 0.41 +0.3 223,108 - SO0211 0.42 +1.2 223,170 + SO0211 0.56 -1.5 223,170 + SO0211 0.56 -0.7 223,170 + SO0211 0.56 +2.9 223,224 + SO0211 0.69 -2.1 223,243 - SO0211 0.73 -1.3 223,289 + SO0211 0.83 +1.2 223,289 + SO0211 0.83 +0.4 223,297 - SO0211 0.85 -1.1 223,422 + +0.6 223,424 - +2.0 223,465 + -1.4 223,578 - +0.1
Or see this region's nucleotide sequence