Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0074 and SO_A0075 are separated by 88 nucleotides SO_A0075 and SOA0076 overlap by 8 nucleotides SOA0076 and SOA0077 are separated by 188 nucleotides
SOA0074: SOA0074 - ISSod6, transposase (NCBI ptt file), at 58,734 to 59,492
SOA0074
SO_A0075: SO_A0075 - no description, at 59,581 to 59,880
_A0075
SOA0076: SOA0076 - conserved domain protein (NCBI ptt file), at 59,873 to 60,157
SOA0076
SOA0077: SOA0077 - site-specific recombinase, resolvase family (NCBI ptt file), at 60,346 to 60,981
SOA0077
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 59.647 kb on + strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.660 kb on + strand, within SO_A0075 at 59.739 kb on + strand, within SO_A0075 at 59.745 kb on - strand, within SO_A0075 at 59.747 kb on - strand, within SO_A0075 at 59.805 kb on + strand, within SO_A0075 at 59.805 kb on + strand, within SO_A0075 at 59.805 kb on + strand, within SO_A0075 at 59.805 kb on + strand, within SO_A0075 at 59.813 kb on - strand, within SO_A0075 at 59.826 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.842 kb on - strand, within SO_A0075 at 59.842 kb on - strand, within SO_A0075 at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.872 kb on + strand at 59.878 kb on - strand at 59.878 kb on - strand at 59.878 kb on - strand at 59.878 kb on - strand at 59.880 kb on + strand at 59.885 kb on + strand at 59.885 kb on + strand at 59.893 kb on - strand at 59.893 kb on - strand at 59.895 kb on + strand at 59.900 kb on + strand at 59.901 kb on - strand at 59.901 kb on - strand at 59.902 kb on - strand, within SOA0076 at 59.906 kb on + strand, within SOA0076 at 59.909 kb on + strand, within SOA0076 at 59.914 kb on - strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.917 kb on - strand, within SOA0076 at 59.917 kb on - strand, within SOA0076 at 59.924 kb on - strand, within SOA0076 at 59.924 kb on - strand, within SOA0076 at 59.924 kb on - strand, within SOA0076 at 59.924 kb on - strand, within SOA0076 at 59.932 kb on + strand, within SOA0076 at 59.939 kb on + strand, within SOA0076 at 59.945 kb on + strand, within SOA0076 at 59.956 kb on - strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.979 kb on + strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.987 kb on - strand, within SOA0076 at 60.010 kb on + strand, within SOA0076 at 60.016 kb on + strand, within SOA0076 at 60.027 kb on + strand, within SOA0076 at 60.027 kb on + strand, within SOA0076 at 60.027 kb on + strand, within SOA0076 at 60.028 kb on + strand, within SOA0076 at 60.029 kb on - strand, within SOA0076 at 60.035 kb on - strand, within SOA0076 at 60.035 kb on - strand, within SOA0076 at 60.045 kb on - strand, within SOA0076 at 60.046 kb on + strand, within SOA0076 at 60.070 kb on + strand, within SOA0076 at 60.074 kb on - strand, within SOA0076 at 60.078 kb on - strand, within SOA0076 at 60.099 kb on + strand, within SOA0076 at 60.131 kb on + strand at 60.136 kb on + strand at 60.152 kb on - strand at 60.168 kb on - strand at 60.168 kb on - strand at 60.168 kb on - strand at 60.168 kb on - strand at 60.175 kb on + strand at 60.177 kb on + strand at 60.177 kb on + strand at 60.177 kb on + strand at 60.177 kb on + strand at 60.177 kb on + strand at 60.178 kb on - strand at 60.184 kb on - strand at 60.185 kb on - strand at 60.185 kb on - strand at 60.185 kb on - strand at 60.185 kb on - strand at 60.288 kb on + strand at 60.293 kb on + strand at 60.293 kb on + strand at 60.301 kb on - strand at 60.301 kb on - strand at 60.306 kb on - strand at 60.334 kb on + strand at 60.345 kb on - strand at 60.353 kb on + strand at 60.359 kb on - strand at 60.359 kb on - strand at 60.359 kb on - strand at 60.361 kb on + strand at 60.365 kb on + strand at 60.365 kb on + strand at 60.369 kb on - strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on - strand at 60.381 kb on - strand at 60.381 kb on - strand at 60.400 kb on + strand at 60.410 kb on + strand, within SOA0077 at 60.417 kb on + strand, within SOA0077 at 60.429 kb on + strand, within SOA0077 at 60.430 kb on + strand, within SOA0077 at 60.437 kb on - strand, within SOA0077 at 60.439 kb on - strand, within SOA0077 at 60.453 kb on + strand, within SOA0077 at 60.489 kb on - strand, within SOA0077 at 60.489 kb on - strand, within SOA0077 at 60.491 kb on + strand, within SOA0077 at 60.500 kb on + strand, within SOA0077 at 60.508 kb on - strand, within SOA0077 at 60.513 kb on - strand, within SOA0077 at 60.544 kb on - strand, within SOA0077 at 60.651 kb on + strand, within SOA0077 at 60.657 kb on - strand, within SOA0077 at 60.659 kb on - strand, within SOA0077 at 60.692 kb on - strand, within SOA0077 at 60.693 kb on - strand, within SOA0077 at 60.713 kb on - strand, within SOA0077 at 60.713 kb on - strand, within SOA0077 at 60.744 kb on - strand, within SOA0077 at 60.769 kb on + strand, within SOA0077 at 60.769 kb on + strand, within SOA0077 at 60.777 kb on + strand, within SOA0077 at 60.777 kb on + strand, within SOA0077 at 60.777 kb on + strand, within SOA0077 at 60.785 kb on - strand, within SOA0077 at 60.828 kb on + strand, within SOA0077 at 60.871 kb on + strand, within SOA0077 at 60.876 kb on - strand, within SOA0077 at 60.876 kb on - strand, within SOA0077 at 60.876 kb on - strand, within SOA0077 at 60.890 kb on + strand, within SOA0077 at 60.903 kb on - strand, within SOA0077 at 60.957 kb on + strand at 60.982 kb on + strand at 61.027 kb on + strand at 61.080 kb on + strand at 61.088 kb on - strand at 61.088 kb on - strand at 61.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 59,647 + SO_A0075 0.22 -0.8 59,655 - SO_A0075 0.25 -1.4 59,655 - SO_A0075 0.25 -0.3 59,655 - SO_A0075 0.25 -0.6 59,655 - SO_A0075 0.25 +0.1 59,655 - SO_A0075 0.25 -0.1 59,660 + SO_A0075 0.26 +0.3 59,739 + SO_A0075 0.53 -0.4 59,745 - SO_A0075 0.55 -1.4 59,747 - SO_A0075 0.55 +0.7 59,805 + SO_A0075 0.75 +0.2 59,805 + SO_A0075 0.75 -0.3 59,805 + SO_A0075 0.75 +0.1 59,805 + SO_A0075 0.75 +1.8 59,813 - SO_A0075 0.77 +0.4 59,826 + SO_A0075 0.82 -0.8 59,834 + SO_A0075 0.84 +1.1 59,834 + SO_A0075 0.84 -0.3 59,834 + SO_A0075 0.84 +1.0 59,834 + SO_A0075 0.84 -1.4 59,834 + SO_A0075 0.84 +0.7 59,834 + SO_A0075 0.84 -0.5 59,834 + SO_A0075 0.84 +0.5 59,834 + SO_A0075 0.84 +1.0 59,842 - SO_A0075 0.87 +0.3 59,842 - SO_A0075 0.87 +0.0 59,870 + -2.8 59,870 + +1.6 59,870 + -0.2 59,870 + -1.1 59,870 + +0.3 59,870 + -3.0 59,870 + +0.7 59,872 + -1.6 59,878 - -1.6 59,878 - -0.3 59,878 - +0.3 59,878 - -0.3 59,880 + +2.8 59,885 + -1.4 59,885 + +0.1 59,893 - +0.3 59,893 - +0.5 59,895 + +0.2 59,900 + -0.8 59,901 - +0.6 59,901 - -0.2 59,902 - SOA0076 0.10 -0.1 59,906 + SOA0076 0.12 -0.2 59,909 + SOA0076 0.13 +0.1 59,914 - SOA0076 0.14 +0.5 59,916 + SOA0076 0.15 -3.1 59,916 + SOA0076 0.15 +1.1 59,916 + SOA0076 0.15 +1.9 59,916 + SOA0076 0.15 -0.8 59,916 + SOA0076 0.15 +0.2 59,916 + SOA0076 0.15 +1.0 59,916 + SOA0076 0.15 -2.2 59,917 - SOA0076 0.15 +1.2 59,917 - SOA0076 0.15 -2.6 59,924 - SOA0076 0.18 +2.1 59,924 - SOA0076 0.18 +1.2 59,924 - SOA0076 0.18 +1.0 59,924 - SOA0076 0.18 -0.6 59,932 + SOA0076 0.21 +0.4 59,939 + SOA0076 0.23 +0.9 59,945 + SOA0076 0.25 -0.3 59,956 - SOA0076 0.29 -1.0 59,961 + SOA0076 0.31 -2.4 59,961 + SOA0076 0.31 +0.4 59,961 + SOA0076 0.31 -0.3 59,961 + SOA0076 0.31 +1.6 59,961 + SOA0076 0.31 -0.7 59,961 + SOA0076 0.31 +3.0 59,961 + SOA0076 0.31 -2.6 59,961 + SOA0076 0.31 +1.1 59,961 + SOA0076 0.31 -0.5 59,961 + SOA0076 0.31 -0.8 59,961 + SOA0076 0.31 +0.5 59,961 + SOA0076 0.31 +0.4 59,969 - SOA0076 0.34 -1.2 59,969 - SOA0076 0.34 -0.6 59,969 - SOA0076 0.34 +0.3 59,969 - SOA0076 0.34 -0.6 59,969 - SOA0076 0.34 +1.0 59,969 - SOA0076 0.34 -0.8 59,969 - SOA0076 0.34 +0.6 59,969 - SOA0076 0.34 -1.3 59,969 - SOA0076 0.34 -0.2 59,969 - SOA0076 0.34 +0.6 59,969 - SOA0076 0.34 +0.5 59,969 - SOA0076 0.34 +0.8 59,969 - SOA0076 0.34 -0.3 59,969 - SOA0076 0.34 +0.2 59,969 - SOA0076 0.34 +0.1 59,969 - SOA0076 0.34 +0.6 59,972 + SOA0076 0.35 -0.9 59,972 + SOA0076 0.35 -1.4 59,972 + SOA0076 0.35 +1.5 59,972 + SOA0076 0.35 +0.1 59,972 + SOA0076 0.35 -0.2 59,972 + SOA0076 0.35 +1.3 59,972 + SOA0076 0.35 +0.8 59,972 + SOA0076 0.35 +1.2 59,972 + SOA0076 0.35 +0.2 59,972 + SOA0076 0.35 -0.6 59,972 + SOA0076 0.35 -1.0 59,972 + SOA0076 0.35 -0.3 59,972 + SOA0076 0.35 +0.3 59,972 + SOA0076 0.35 -1.7 59,972 + SOA0076 0.35 +3.3 59,972 + SOA0076 0.35 -0.5 59,972 + SOA0076 0.35 -0.4 59,972 + SOA0076 0.35 -1.1 59,972 + SOA0076 0.35 -1.9 59,972 + SOA0076 0.35 +0.5 59,972 + SOA0076 0.35 -0.1 59,972 + SOA0076 0.35 +0.5 59,972 + SOA0076 0.35 +1.2 59,972 + SOA0076 0.35 +1.6 59,972 + SOA0076 0.35 -0.5 59,972 + SOA0076 0.35 -0.2 59,972 + SOA0076 0.35 +0.5 59,972 + SOA0076 0.35 +2.4 59,972 + SOA0076 0.35 -0.2 59,972 + SOA0076 0.35 +1.2 59,979 + SOA0076 0.37 -1.5 59,980 - SOA0076 0.38 -0.4 59,980 - SOA0076 0.38 -0.3 59,980 - SOA0076 0.38 -0.5 59,980 - SOA0076 0.38 +0.2 59,980 - SOA0076 0.38 -1.8 59,980 - SOA0076 0.38 -0.6 59,980 - SOA0076 0.38 -0.5 59,980 - SOA0076 0.38 +0.5 59,980 - SOA0076 0.38 -1.7 59,980 - SOA0076 0.38 +0.9 59,980 - SOA0076 0.38 -1.3 59,980 - SOA0076 0.38 -0.8 59,980 - SOA0076 0.38 +1.2 59,980 - SOA0076 0.38 -1.0 59,980 - SOA0076 0.38 -0.4 59,980 - SOA0076 0.38 -0.5 59,980 - SOA0076 0.38 -1.1 59,980 - SOA0076 0.38 +0.4 59,980 - SOA0076 0.38 -0.6 59,980 - SOA0076 0.38 +4.2 59,980 - SOA0076 0.38 +0.9 59,980 - SOA0076 0.38 +0.2 59,980 - SOA0076 0.38 -0.5 59,980 - SOA0076 0.38 -1.6 59,980 - SOA0076 0.38 -2.1 59,987 - SOA0076 0.40 -0.6 60,010 + SOA0076 0.48 +0.6 60,016 + SOA0076 0.50 +0.5 60,027 + SOA0076 0.54 +0.5 60,027 + SOA0076 0.54 +1.2 60,027 + SOA0076 0.54 -1.4 60,028 + SOA0076 0.54 +0.3 60,029 - SOA0076 0.55 -0.2 60,035 - SOA0076 0.57 +1.0 60,035 - SOA0076 0.57 -0.9 60,045 - SOA0076 0.60 +3.4 60,046 + SOA0076 0.61 +0.2 60,070 + SOA0076 0.69 -0.9 60,074 - SOA0076 0.71 +0.5 60,078 - SOA0076 0.72 -0.1 60,099 + SOA0076 0.79 +0.2 60,131 + -0.3 60,136 + -1.0 60,152 - +1.1 60,168 - +0.2 60,168 - +0.3 60,168 - +1.1 60,168 - +0.0 60,175 + -1.8 60,177 + +0.5 60,177 + +1.6 60,177 + -0.3 60,177 + -0.7 60,177 + -0.1 60,178 - -0.2 60,184 - -0.4 60,185 - -0.7 60,185 - -1.0 60,185 - -0.3 60,185 - +1.4 60,288 + +0.6 60,293 + +1.5 60,293 + +0.4 60,301 - -1.0 60,301 - +0.1 60,306 - +0.5 60,334 + +0.5 60,345 - +0.6 60,353 + +0.9 60,359 - -0.8 60,359 - -1.3 60,359 - +0.1 60,361 + -0.3 60,365 + +1.9 60,365 + -0.8 60,369 - -0.6 60,373 + +1.5 60,373 + -0.9 60,373 + -2.5 60,373 + +2.5 60,373 + -0.9 60,373 + +0.4 60,373 + -0.4 60,373 + +0.7 60,373 - -1.4 60,381 - +0.0 60,381 - -0.4 60,400 + -1.6 60,410 + SOA0077 0.10 +0.8 60,417 + SOA0077 0.11 -2.0 60,429 + SOA0077 0.13 -1.3 60,430 + SOA0077 0.13 -1.0 60,437 - SOA0077 0.14 -0.1 60,439 - SOA0077 0.15 -0.0 60,453 + SOA0077 0.17 +0.4 60,489 - SOA0077 0.22 -1.2 60,489 - SOA0077 0.22 -0.6 60,491 + SOA0077 0.23 -2.0 60,500 + SOA0077 0.24 -2.5 60,508 - SOA0077 0.25 -0.4 60,513 - SOA0077 0.26 -0.6 60,544 - SOA0077 0.31 -1.6 60,651 + SOA0077 0.48 +0.5 60,657 - SOA0077 0.49 +0.0 60,659 - SOA0077 0.49 -0.9 60,692 - SOA0077 0.54 +0.6 60,693 - SOA0077 0.55 +0.1 60,713 - SOA0077 0.58 -1.5 60,713 - SOA0077 0.58 -0.8 60,744 - SOA0077 0.63 +0.7 60,769 + SOA0077 0.67 -0.0 60,769 + SOA0077 0.67 +0.4 60,777 + SOA0077 0.68 +0.9 60,777 + SOA0077 0.68 -1.4 60,777 + SOA0077 0.68 +0.4 60,785 - SOA0077 0.69 -0.2 60,828 + SOA0077 0.76 -1.3 60,871 + SOA0077 0.83 -1.3 60,876 - SOA0077 0.83 +1.4 60,876 - SOA0077 0.83 +4.7 60,876 - SOA0077 0.83 +1.1 60,890 + SOA0077 0.86 +0.6 60,903 - SOA0077 0.88 -0.9 60,957 + +0.2 60,982 + -3.0 61,027 + -0.4 61,080 + -0.9 61,088 - +0.2 61,088 - -1.0 61,114 + -0.6
Or see this region's nucleotide sequence