Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0054 and SO_A0055 are separated by 8 nucleotides SO_A0055 and SOA0056 are separated by 76 nucleotides SOA0056 and SOA0057 are separated by 28 nucleotides SOA0057 and SO_A0058 are separated by 188 nucleotides
SO_A0053: SO_A0053 - ISSod1, transposase OrfA (NCBI), at 45,061 to 46,220
_A0053
SOA0054: SOA0054 - ISSod1, transposase OrfB (NCBI ptt file), at 45,411 to 46,220
SOA0054
SO_A0055: SO_A0055 - no description, at 46,229 to 46,534
_A0055
SOA0056: SOA0056 - hypothetical protein (NCBI ptt file), at 46,611 to 46,793
SOA0056
SOA0057: SOA0057 - hypothetical protein (NCBI ptt file), at 46,822 to 47,049
SOA0057
SO_A0058: SO_A0058 - hypothetical protein (NCBI), at 47,238 to 47,987
_A0058
Position (kb) 46
47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 46.209 kb on + strand at 46.209 kb on + strand at 46.209 kb on + strand at 46.210 kb on + strand at 46.210 kb on + strand at 46.219 kb on + strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.229 kb on + strand at 46.237 kb on - strand at 46.250 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.269 kb on + strand, within SO_A0055 at 46.287 kb on - strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.343 kb on + strand, within SO_A0055 at 46.343 kb on + strand, within SO_A0055 at 46.343 kb on + strand, within SO_A0055 at 46.349 kb on - strand, within SO_A0055 at 46.356 kb on + strand, within SO_A0055 at 46.359 kb on - strand, within SO_A0055 at 46.371 kb on - strand, within SO_A0055 at 46.374 kb on + strand, within SO_A0055 at 46.374 kb on + strand, within SO_A0055 at 46.377 kb on - strand, within SO_A0055 at 46.379 kb on + strand, within SO_A0055 at 46.382 kb on - strand, within SO_A0055 at 46.387 kb on - strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.417 kb on - strand, within SO_A0055 at 46.419 kb on + strand, within SO_A0055 at 46.419 kb on + strand, within SO_A0055 at 46.421 kb on + strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.431 kb on + strand, within SO_A0055 at 46.431 kb on + strand, within SO_A0055 at 46.431 kb on + strand, within SO_A0055 at 46.431 kb on + strand, within SO_A0055 at 46.439 kb on - strand, within SO_A0055 at 46.439 kb on - strand, within SO_A0055 at 46.637 kb on - strand, within SOA0056 at 46.637 kb on - strand, within SOA0056 at 46.659 kb on + strand, within SOA0056 at 46.660 kb on + strand, within SOA0056 at 46.660 kb on + strand, within SOA0056 at 46.668 kb on - strand, within SOA0056 at 46.677 kb on - strand, within SOA0056 at 46.799 kb on - strand at 46.801 kb on - strand at 46.935 kb on + strand, within SOA0057 at 47.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 46,209 + +0.1 46,209 + -1.2 46,209 + +0.3 46,210 + +1.3 46,210 + +0.4 46,219 + -0.8 46,224 + +2.3 46,224 + +0.6 46,224 + +0.2 46,224 + -0.3 46,224 + -0.8 46,229 + -1.0 46,237 - -0.1 46,250 - -0.7 46,252 - -0.7 46,252 - -1.0 46,269 + SO_A0055 0.13 +0.9 46,287 - SO_A0055 0.19 +0.4 46,300 + SO_A0055 0.23 -0.3 46,300 + SO_A0055 0.23 +1.5 46,300 + SO_A0055 0.23 -0.0 46,300 + SO_A0055 0.23 +0.2 46,300 + SO_A0055 0.23 +0.5 46,300 + SO_A0055 0.23 +2.2 46,308 - SO_A0055 0.26 -1.1 46,308 - SO_A0055 0.26 -0.9 46,308 - SO_A0055 0.26 +0.0 46,308 - SO_A0055 0.26 -0.4 46,308 - SO_A0055 0.26 -0.8 46,308 - SO_A0055 0.26 +0.8 46,343 + SO_A0055 0.37 -0.1 46,343 + SO_A0055 0.37 -0.0 46,343 + SO_A0055 0.37 -1.0 46,349 - SO_A0055 0.39 -0.2 46,356 + SO_A0055 0.42 +0.4 46,359 - SO_A0055 0.42 -0.3 46,371 - SO_A0055 0.46 -1.0 46,374 + SO_A0055 0.47 +0.2 46,374 + SO_A0055 0.47 +0.6 46,377 - SO_A0055 0.48 +2.8 46,379 + SO_A0055 0.49 -1.9 46,382 - SO_A0055 0.50 -0.2 46,387 - SO_A0055 0.52 -0.7 46,409 + SO_A0055 0.59 -0.2 46,409 + SO_A0055 0.59 +0.4 46,409 + SO_A0055 0.59 +0.6 46,409 + SO_A0055 0.59 -3.9 46,409 + SO_A0055 0.59 +2.4 46,417 - SO_A0055 0.61 -1.7 46,419 + SO_A0055 0.62 -1.0 46,419 + SO_A0055 0.62 -0.2 46,421 + SO_A0055 0.63 -0.4 46,427 - SO_A0055 0.65 -0.5 46,427 - SO_A0055 0.65 +0.3 46,427 - SO_A0055 0.65 -0.6 46,427 - SO_A0055 0.65 +0.1 46,427 - SO_A0055 0.65 -0.6 46,427 - SO_A0055 0.65 +0.2 46,427 - SO_A0055 0.65 +1.8 46,431 + SO_A0055 0.66 -1.3 46,431 + SO_A0055 0.66 +1.5 46,431 + SO_A0055 0.66 +1.2 46,431 + SO_A0055 0.66 +2.3 46,439 - SO_A0055 0.69 -1.6 46,439 - SO_A0055 0.69 +0.5 46,637 - SOA0056 0.14 +0.1 46,637 - SOA0056 0.14 +0.2 46,659 + SOA0056 0.26 +1.2 46,660 + SOA0056 0.27 +2.4 46,660 + SOA0056 0.27 +1.0 46,668 - SOA0056 0.31 +0.9 46,677 - SOA0056 0.36 -3.4 46,799 - -0.7 46,801 - +0.6 46,935 + SOA0057 0.50 -3.1 47,034 - -0.8
Or see this region's nucleotide sequence