Strain Fitness in Shewanella oneidensis MR-1 around SO4623

Experiment: fumarate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	fumarate electron acceptor
4,818,061	+		SO4622	0.19	+0.9
4,818,069	-		SO4622	0.20	+0.2
4,818,075	+		SO4622	0.21	-0.4
4,818,113	+		SO4622	0.24	-2.0
4,818,120	+		SO4622	0.24	+0.1
4,818,121	+		SO4622	0.24	-0.8
4,818,121	+		SO4622	0.24	+0.2
4,818,121	-		SO4622	0.24	-3.0
4,818,122	+		SO4622	0.24	+1.4
4,818,122	+		SO4622	0.24	-0.9
4,818,129	-		SO4622	0.25	+0.3
4,818,129	-		SO4622	0.25	+0.0
4,818,130	+		SO4622	0.25	+1.5
4,818,135	-		SO4622	0.25	+2.1
4,818,135	-		SO4622	0.25	+0.0
4,818,137	+		SO4622	0.26	+1.4
4,818,145	-		SO4622	0.26	-2.4
4,818,146	-		SO4622	0.26	+0.7
4,818,151	-		SO4622	0.27	+1.5
4,818,185	+		SO4622	0.29	-0.3
4,818,193	+		SO4622	0.30	-0.3
4,818,201	+		SO4622	0.31	+0.5
4,818,201	+		SO4622	0.31	-0.4
4,818,201	+		SO4622	0.31	-1.0
4,818,203	-		SO4622	0.31	+1.9
4,818,209	-		SO4622	0.31	+0.3
4,818,209	-		SO4622	0.31	+0.1
4,818,209	-		SO4622	0.31	-0.7
4,818,211	+		SO4622	0.31	-1.7
4,818,218	+		SO4622	0.32	-0.4
4,818,219	+		SO4622	0.32	-0.6
4,818,219	+		SO4622	0.32	+1.9
4,818,219	+		SO4622	0.32	+1.5
4,818,225	+		SO4622	0.33	-0.1
4,818,225	+		SO4622	0.33	-1.7
4,818,226	+		SO4622	0.33	-1.4
4,818,226	+		SO4622	0.33	+0.4
4,818,226	-		SO4622	0.33	+2.9
4,818,227	-		SO4622	0.33	-1.3
4,818,227	-		SO4622	0.33	-1.6
4,818,233	-		SO4622	0.33	+0.7
4,818,234	-		SO4622	0.33	-0.6
4,818,257	+		SO4622	0.35	-0.4
4,818,265	+		SO4622	0.36	+0.5
4,818,265	+		SO4622	0.36	-0.1
4,818,265	+		SO4622	0.36	+0.2
4,818,265	+		SO4622	0.36	+0.9
4,818,265	+		SO4622	0.36	-0.2
4,818,265	+		SO4622	0.36	-0.7
4,818,265	+		SO4622	0.36	-0.1
4,818,265	+		SO4622	0.36	+0.5
4,818,267	+		SO4622	0.36	-0.5
4,818,270	-		SO4622	0.36	+0.5
4,818,272	+		SO4622	0.36	+0.1
4,818,272	+		SO4622	0.36	+0.3
4,818,272	+		SO4622	0.36	+0.8
4,818,273	-		SO4622	0.36	+0.6
4,818,273	-		SO4622	0.36	+0.6
4,818,273	-		SO4622	0.36	+0.0
4,818,274	-		SO4622	0.37	-0.1
4,818,275	-		SO4622	0.37	-0.2
4,818,280	-		SO4622	0.37	+0.8
4,818,280	-		SO4622	0.37	+1.4
4,818,286	+		SO4622	0.38	-2.7
4,818,287	+		SO4622	0.38	+0.1
4,818,288	-		SO4622	0.38	+0.3
4,818,288	-		SO4622	0.38	-1.2
4,818,288	-		SO4622	0.38	-0.2
4,818,288	-		SO4622	0.38	+1.1
4,818,292	+		SO4622	0.38	-2.9
4,818,296	+		SO4622	0.38	+0.3
4,818,296	+		SO4622	0.38	+0.0
4,818,296	+		SO4622	0.38	-0.3
4,818,296	+		SO4622	0.38	+0.0
4,818,296	+		SO4622	0.38	-1.6
4,818,304	-		SO4622	0.39	-0.4
4,818,304	-		SO4622	0.39	+0.1
4,818,335	-		SO4622	0.41	-0.8
4,818,387	+		SO4622	0.46	+1.6
4,818,389	+		SO4622	0.46	-0.8
4,818,405	-		SO4622	0.47	-0.3
4,818,405	-		SO4622	0.47	-0.0
4,818,405	-		SO4622	0.47	+0.9
4,818,446	+		SO4622	0.50	+0.9
4,818,447	-		SO4622	0.50	-1.6
4,818,456	+		SO4622	0.51	+0.2
4,818,461	-		SO4622	0.52	+0.5
4,818,471	+		SO4622	0.52	-1.1
4,818,471	+		SO4622	0.52	+0.6
4,818,511	-		SO4622	0.56	-2.6
4,818,532	+		SO4622	0.57	-2.2
4,818,532	+		SO4622	0.57	+1.6
4,818,532	+		SO4622	0.57	-0.4
4,818,532	+		SO4622	0.57	-0.2
4,818,540	-		SO4622	0.58	-1.4
4,818,540	-		SO4622	0.58	-0.6
4,818,540	-		SO4622	0.58	+0.6
4,818,566	+		SO4622	0.60	+0.2
4,818,580	-		SO4622	0.61	+0.7
4,818,641	-		SO4622	0.66	-0.5
4,818,649	+		SO4622	0.67	-2.8
4,818,649	+		SO4622	0.67	+1.9
4,818,652	-		SO4622	0.67	+4.5
4,818,657	-		SO4622	0.67	-3.0
4,818,657	-		SO4622	0.67	+1.2
4,818,657	-		SO4622	0.67	+0.2
4,818,657	-		SO4622	0.67	-0.1
4,818,657	-		SO4622	0.67	-0.5
4,818,670	-		SO4622	0.68	-1.6
4,818,694	-		SO4622	0.70	-0.9
4,818,696	+		SO4622	0.71	-0.4
4,818,696	+		SO4622	0.71	-0.5
4,818,699	-		SO4622	0.71	-1.8
4,818,703	-		SO4622	0.71	-0.3
4,818,703	-		SO4622	0.71	+3.5
4,818,703	-		SO4622	0.71	-1.9
4,818,724	+		SO4622	0.73	-0.4
4,818,759	+		SO4622	0.76	-0.4
4,818,790	-		SO4622	0.78	+0.1
4,818,803	+		SO4622	0.79	+0.5
4,818,817	+		SO4622	0.80	-3.1
4,818,831	-		SO4622	0.81	-0.3
4,818,845	+		SO4622	0.83	-0.7
4,818,869	+		SO4622	0.84	+1.0
4,818,883	+		SO4622	0.86	-0.0
4,818,886	-		SO4622	0.86	+0.4
4,818,911	-		SO4622	0.88	-0.2
4,818,913	+		SO4622	0.88	+0.1
4,818,921	-		SO4622	0.89	-0.5
4,818,921	-		SO4622	0.89	-1.6
4,818,942	+				-1.1
4,818,979	-				+0.6
4,818,994	-				-0.5
4,818,994	-				-0.3
4,819,023	-				-1.7
4,819,071	-				+0.1
4,819,077	+				+0.1
4,819,078	+				+0.0
4,819,085	-				-0.5
4,819,085	-				-1.5
4,819,086	-				+1.3
4,819,086	-				-0.1
4,819,201	-		SO4623	0.23	+0.5
4,819,293	-		SO4623	0.36	-0.9
4,819,303	+		SO4623	0.38	-1.4
4,819,318	-		SO4623	0.40	-0.7
4,819,362	-		SO4623	0.46	+3.6
4,819,385	+		SO4623	0.50	+1.0
4,819,393	-		SO4623	0.51	+1.3
4,819,506	-		SO4623	0.68	-0.4
4,819,529	-		SO4623	0.71	+0.7
4,819,542	+		SO4623	0.73	+0.3
4,819,542	+		SO4623	0.73	+0.5
4,819,542	+		SO4623	0.73	+1.3
4,819,550	-		SO4623	0.74	-0.2
4,819,550	-		SO4623	0.74	-0.1
4,819,586	-		SO4623	0.79	-0.1
4,819,631	-		SO4623	0.86	-1.4
4,819,656	-		SO4623	0.90	+0.5
4,819,702	+				-0.4
4,819,703	+				+0.1
4,819,812	+				+0.3
4,819,820	-		SO4624	0.12	-2.1
4,819,823	+		SO4624	0.13	+1.1
4,819,831	-		SO4624	0.14	-1.3
4,819,831	-		SO4624	0.14	-1.8
4,819,906	+		SO4624	0.24	+0.6
4,819,920	+		SO4624	0.26	+0.8
4,819,980	+		SO4624	0.34	-2.4
4,819,987	-		SO4624	0.35	-1.1
4,819,987	-		SO4624	0.35	-1.8
4,820,029	+		SO4624	0.40	+0.2
4,820,039	+		SO4624	0.42	-1.3
4,820,039	+		SO4624	0.42	+0.1
4,820,047	-		SO4624	0.43	+0.1
4,820,058	+		SO4624	0.44	+1.7
4,820,061	-		SO4624	0.45	-1.3
4,820,061	-		SO4624	0.45	-0.0
4,820,061	-		SO4624	0.45	+1.2
4,820,088	+		SO4624	0.48	-0.6
4,820,088	+		SO4624	0.48	+0.3
4,820,088	+		SO4624	0.48	-0.0
4,820,088	+		SO4624	0.48	+0.0
4,820,088	+		SO4624	0.48	-0.9
4,820,088	+		SO4624	0.48	+2.3
4,820,096	-		SO4624	0.49	+1.0
4,820,096	-		SO4624	0.49	-4.5
4,820,096	-		SO4624	0.49	-0.1
4,820,096	-		SO4624	0.49	-0.3
4,820,096	-		SO4624	0.49	-1.2
4,820,096	-		SO4624	0.49	+0.0
4,820,096	-		SO4624	0.49	+0.1
4,820,096	-		SO4624	0.49	-2.3
4,820,096	-		SO4624	0.49	-0.0
4,820,096	-		SO4624	0.49	+1.2
4,820,140	-		SO4624	0.55	+0.9
4,820,179	-		SO4624	0.60	+0.9
4,820,251	+		SO4624	0.70	-0.4
4,820,251	+		SO4624	0.70	-1.2
4,820,251	+		SO4624	0.70	+1.3
4,820,252	+		SO4624	0.70	-3.1
4,820,252	+		SO4624	0.70	-0.1
4,820,252	+		SO4624	0.70	-0.9
4,820,259	-		SO4624	0.71	-0.1
4,820,260	-		SO4624	0.71	-0.7
4,820,260	-		SO4624	0.71	-1.3
4,820,264	+		SO4624	0.72	-1.1
4,820,264	+		SO4624	0.72	+1.2
4,820,264	+		SO4624	0.72	-2.4
4,820,264	+		SO4624	0.72	-1.3
4,820,264	+		SO4624	0.72	+1.4
4,820,264	+		SO4624	0.72	-1.7
4,820,264	+		SO4624	0.72	+0.9
4,820,272	-		SO4624	0.73	-0.6
4,820,272	-		SO4624	0.73	-0.7
4,820,272	-		SO4624	0.73	+1.5
4,820,274	+		SO4624	0.73	+0.6
4,820,281	+		SO4624	0.74	-0.4
4,820,297	-		SO4624	0.76	-0.0
4,820,299	+		SO4624	0.76	+0.5
4,820,307	-		SO4624	0.78	+0.8
4,820,307	-		SO4624	0.78	+1.0
4,820,375	+		SO4624	0.87	-0.7
4,820,383	-		SO4624	0.88	-2.4
4,820,422	-				-1.2
4,820,422	-				+1.3
4,820,470	-				-0.2
4,820,612	-				+0.8
4,820,627	-				-0.3
4,820,634	+				-0.8
4,820,646	+				+3.8
4,820,659	+				-1.3