Strain Fitness in Shewanella oneidensis MR-1 around SO3029

Experiment: fumarate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3027 and SO3029 are separated by 183 nucleotidesSO3029 and alcA are separated by 576 nucleotides SO3027: SO3027 - hypothetical protein (NCBI ptt file), at 3,138,518 to 3,138,961 SO3027 SO3029: SO3029 - hypothetical protein (NCBI ptt file), at 3,139,145 to 3,139,429 SO3029 SO3030: alcA - siderophore biosynthesis protein (NCBI ptt file), at 3,140,006 to 3,141,502 alcA Position (kb) 3139 3140Strain fitness (log2 ratio) -2 -1 0 1at 3138.151 kb on - strandat 3138.151 kb on - strandat 3138.420 kb on - strandat 3138.570 kb on - strand, within SO3027at 3138.577 kb on - strand, within SO3027at 3138.857 kb on + strand, within SO3027at 3138.865 kb on - strand, within SO3027at 3138.909 kb on + strand, within SO3027at 3138.909 kb on + strand, within SO3027at 3138.956 kb on + strandat 3138.995 kb on + strandat 3139.131 kb on + strandat 3139.131 kb on - strandat 3139.131 kb on - strandat 3139.160 kb on - strandat 3139.310 kb on - strand, within SO3029at 3139.599 kb on - strandat 3139.766 kb on - strandat 3139.910 kb on - strandat 3139.948 kb on - strandat 3139.950 kb on - strandat 3140.000 kb on + strandat 3140.060 kb on + strandat 3140.076 kb on + strandat 3140.084 kb on - strandat 3140.095 kb on + strandat 3140.111 kb on + strandat 3140.160 kb on + strand, within alcAat 3140.276 kb on + strand, within alcAat 3140.284 kb on - strand, within alcA

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor
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3,138,151 - -0.3
3,138,151 - +0.2
3,138,420 - -0.2
3,138,570 - SO3027 0.12 +0.7
3,138,577 - SO3027 0.13 +0.1
3,138,857 + SO3027 0.76 +1.4
3,138,865 - SO3027 0.78 -1.1
3,138,909 + SO3027 0.88 +0.4
3,138,909 + SO3027 0.88 -0.7
3,138,956 + +1.2
3,138,995 + -0.3
3,139,131 + +1.2
3,139,131 - -1.4
3,139,131 - -0.4
3,139,160 - +1.3
3,139,310 - SO3029 0.58 -2.3
3,139,599 - -0.4
3,139,766 - -2.3
3,139,910 - +0.4
3,139,948 - +0.6
3,139,950 - +0.7
3,140,000 + +1.4
3,140,060 + +0.2
3,140,076 + +1.1
3,140,084 - +1.0
3,140,095 + +0.4
3,140,111 + +0.9
3,140,160 + alcA SO3030 0.10 -2.4
3,140,276 + alcA SO3030 0.18 -0.2
3,140,284 - alcA SO3030 0.19 +0.4

Or see this region's nucleotide sequence