Strain Fitness in Shewanella oneidensis MR-1 around SO1864

Experiment: fumarate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	fumarate electron acceptor
1,955,448	+				-0.2
1,955,465	+				+0.1
1,955,465	+				-0.7
1,955,647	+				-1.2
1,955,778	+				+0.5
1,955,786	-				-0.7
1,955,786	-				-3.1
1,955,798	+				-0.0
1,955,822	+				+0.6
1,955,855	-				+0.0
1,955,879	-				+1.6
1,955,928	+				-2.0
1,955,983	+				+0.8
1,955,991	-				+0.5
1,955,993	+		SO1863	0.10	-0.5
1,956,008	-		SO1863	0.16	+0.3
1,956,150	+		SO1863	0.67	-0.5
1,956,174	+		SO1863	0.76	+0.6
1,956,179	+		SO1863	0.78	-0.8
1,956,181	-		SO1863	0.78	+2.3
1,956,182	-		SO1863	0.79	-0.2
1,956,185	+		SO1863	0.80	-0.5
1,956,185	+		SO1863	0.80	-1.9
1,956,185	+		SO1863	0.80	-0.6
1,956,193	-		SO1863	0.83	-2.8
1,956,193	-		SO1863	0.83	-0.4
1,956,193	-		SO1863	0.83	+1.1
1,956,195	+		SO1863	0.83	-1.3
1,956,195	+		SO1863	0.83	+0.0
1,956,225	+				+0.3
1,956,228	-				-2.0
1,956,233	-				-1.2
1,956,233	-				+0.9
1,956,233	-				-0.0
1,956,272	+				-0.7
1,956,277	+				-0.2
1,956,298	-				+0.5
1,956,316	-				+0.2
1,956,327	+				+0.2
1,956,374	-				-0.3
1,956,379	+				+0.5
1,956,384	+				-0.7
1,956,397	-				-0.8
1,956,400	+				-1.0
1,956,400	+				-0.1
1,956,400	+				+1.0
1,956,400	+				-0.9
1,956,400	+				+1.2
1,956,400	+				+0.5
1,956,407	-				+0.1
1,956,407	-				-2.0
1,956,407	-				+1.1
1,956,408	-				-1.7
1,956,408	-				+0.5
1,956,408	-				-1.8
1,956,408	-				-1.2
1,956,408	-				+1.4
1,956,408	-				+0.3
1,956,408	-				-1.3
1,956,408	-				+0.5
1,956,408	-				+1.9
1,956,408	-				-0.5
1,956,408	-				-1.1
1,956,408	-				+0.7
1,956,408	-				+0.1
1,956,445	+				-0.5
1,956,445	+				+0.1
1,956,498	-				+1.7
1,956,531	+		SO1864	0.14	+0.5
1,956,539	+		SO1864	0.15	+0.5
1,956,615	+		SO1864	0.26	-2.2
1,956,657	-		SO1864	0.31	+0.7
1,956,659	+		SO1864	0.32	-1.0
1,956,659	+		SO1864	0.32	-0.7
1,956,659	+		SO1864	0.32	+0.7
1,956,659	+		SO1864	0.32	-0.5
1,956,659	+		SO1864	0.32	+1.5
1,956,659	+		SO1864	0.32	+0.2
1,956,667	-		SO1864	0.33	+1.9
1,956,696	+		SO1864	0.37	+0.5
1,956,696	+		SO1864	0.37	+0.5
1,956,696	+		SO1864	0.37	+1.2
1,956,696	+		SO1864	0.37	+0.0
1,956,696	+		SO1864	0.37	+0.6
1,956,696	+		SO1864	0.37	+0.3
1,956,696	+		SO1864	0.37	-0.1
1,956,696	+		SO1864	0.37	+0.5
1,956,696	+		SO1864	0.37	+0.4
1,956,697	+		SO1864	0.37	+0.6
1,956,704	-		SO1864	0.38	+0.6
1,956,704	-		SO1864	0.38	-0.9
1,956,704	-		SO1864	0.38	+1.0
1,956,704	-		SO1864	0.38	-0.4
1,956,704	-		SO1864	0.38	-0.3
1,956,704	-		SO1864	0.38	+1.0
1,956,704	-		SO1864	0.38	-0.9
1,956,705	-		SO1864	0.38	+0.4
1,956,705	-		SO1864	0.38	+1.6
1,956,705	-		SO1864	0.38	-0.4
1,956,705	-		SO1864	0.38	-0.5
1,956,761	-		SO1864	0.46	-1.7
1,956,763	+		SO1864	0.46	-0.5
1,956,763	+		SO1864	0.46	+0.5
1,956,763	+		SO1864	0.46	+0.1
1,956,771	-		SO1864	0.47	+2.2
1,956,771	-		SO1864	0.47	+1.3
1,956,771	-		SO1864	0.47	-0.1
1,956,817	-		SO1864	0.54	+0.7
1,956,841	-		SO1864	0.57	-0.1
1,956,845	+		SO1864	0.57	+0.1
1,956,870	-		SO1864	0.61	+0.4
1,956,870	-		SO1864	0.61	-2.2
1,956,878	-		SO1864	0.62	-0.6
1,956,883	-		SO1864	0.63	-0.9
1,956,900	-		SO1864	0.65	+2.0
1,956,921	+		SO1864	0.68	+0.6
1,956,945	-		SO1864	0.71	-0.5
1,956,945	-		SO1864	0.71	-0.1
1,956,953	+		SO1864	0.72	+0.2
1,956,958	+		SO1864	0.73	+0.2
1,956,958	+		SO1864	0.73	+1.0
1,956,958	+		SO1864	0.73	+0.5
1,956,958	+		SO1864	0.73	-1.4
1,956,965	+		SO1864	0.74	-0.3
1,956,966	-		SO1864	0.74	-0.5
1,956,966	-		SO1864	0.74	+0.9
1,956,966	-		SO1864	0.74	-1.2
1,956,970	+		SO1864	0.75	-0.5
1,956,970	+		SO1864	0.75	-0.2
1,956,970	+		SO1864	0.75	-0.7
1,956,970	+		SO1864	0.75	+1.3
1,956,971	-		SO1864	0.75	+1.3
1,956,973	-		SO1864	0.75	+0.2
1,956,973	-		SO1864	0.75	-0.9
1,956,973	-		SO1864	0.75	-0.7
1,956,975	+		SO1864	0.76	+0.5
1,956,978	-		SO1864	0.76	+0.5
1,956,978	-		SO1864	0.76	+2.0
1,956,978	-		SO1864	0.76	-1.5
1,956,983	-		SO1864	0.77	+0.6
1,956,988	+		SO1864	0.77	+0.1
1,956,995	-		SO1864	0.78	+1.5
1,957,006	+		SO1864	0.80	-0.6
1,957,006	+		SO1864	0.80	-0.3
1,957,006	+		SO1864	0.80	+1.6
1,957,006	+		SO1864	0.80	-0.7
1,957,006	+		SO1864	0.80	+1.0
1,957,007	+		SO1864	0.80	+1.3
1,957,014	+		SO1864	0.81	-1.2
1,957,022	-		SO1864	0.82	+0.5
1,957,023	-		SO1864	0.82	-2.0
1,957,055	-		SO1864	0.87	+0.6
1,957,107	+				+0.4
1,957,107	-				-0.1
1,957,115	+				+0.8
1,957,127	+				+0.7
1,957,127	+				+0.3
1,957,127	+				-1.0
1,957,127	+				-2.0
1,957,127	+				-0.9
1,957,133	-				-1.0
1,957,135	-				+1.3
1,957,135	-				+0.3
1,957,135	-				+1.0
1,957,166	+				+0.0
1,957,186	-				+2.8
1,957,188	-				+0.9
1,957,188	-				+1.0
1,957,212	+				-0.3
1,957,234	-				-1.7
1,957,234	-				-1.0
1,957,234	-				-0.7
1,957,234	-				-1.4
1,957,234	-				-1.1
1,957,244	-				-0.0
1,957,260	+				+2.4
1,957,267	-				+0.0
1,957,352	-		SO1865	0.17	-0.2
1,957,385	+		SO1865	0.21	+0.0
1,957,390	+		SO1865	0.21	-0.5
1,957,393	-		SO1865	0.22	+0.8
1,957,393	-		SO1865	0.22	+1.4
1,957,395	+		SO1865	0.22	-1.5
1,957,403	-		SO1865	0.23	-2.6
1,957,411	+		SO1865	0.24	+0.3
1,957,429	+		SO1865	0.26	-0.5
1,957,479	+		SO1865	0.31	-0.4
1,957,484	+		SO1865	0.32	+0.1
1,957,484	+		SO1865	0.32	-1.1
1,957,666	+		SO1865	0.52	+2.2
1,957,701	+		SO1865	0.56	-1.3
1,957,701	+		SO1865	0.56	-1.9
1,957,941	+		SO1865	0.82	+1.2
1,957,941	+		SO1865	0.82	+1.2
1,957,952	+		SO1865	0.83	-0.4
1,957,952	+		SO1865	0.83	+1.2
1,957,952	+		SO1865	0.83	+0.2
1,957,969	-		SO1865	0.85	-0.5
1,958,099	-				-0.5
1,958,106	-				+1.0