Strain Fitness in Shewanella oneidensis MR-1 around SO1420

Experiment: fumarate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	fumarate electron acceptor
1,477,454	+		SO1419	0.28	+1.2
1,477,462	-		SO1419	0.29	+0.0
1,477,462	-		SO1419	0.29	+0.2
1,477,505	+		SO1419	0.32	+0.5
1,477,516	+		SO1419	0.33	-0.4
1,477,516	+		SO1419	0.33	-0.9
1,477,516	+		SO1419	0.33	-0.9
1,477,523	+		SO1419	0.34	+1.1
1,477,524	-		SO1419	0.34	-1.4
1,477,524	-		SO1419	0.34	-0.1
1,477,527	+		SO1419	0.34	+1.6
1,477,530	-		SO1419	0.34	-0.3
1,477,570	+		SO1419	0.37	-0.5
1,477,570	+		SO1419	0.37	-0.2
1,477,571	+		SO1419	0.37	+0.1
1,477,578	+		SO1419	0.38	-0.2
1,477,578	-		SO1419	0.38	-3.2
1,477,578	-		SO1419	0.38	-0.6
1,477,581	-		SO1419	0.38	-0.5
1,477,610	+		SO1419	0.40	-0.9
1,477,618	-		SO1419	0.41	-0.9
1,477,619	+		SO1419	0.41	+0.4
1,477,728	+		SO1419	0.49	+0.1
1,477,743	+		SO1419	0.50	-0.6
1,477,761	-		SO1419	0.51	-2.8
1,477,811	-		SO1419	0.55	-1.8
1,477,836	+		SO1419	0.57	+0.1
1,477,836	+		SO1419	0.57	+2.5
1,477,838	+		SO1419	0.57	+0.6
1,477,846	+		SO1419	0.57	+1.0
1,477,846	+		SO1419	0.57	-0.4
1,477,928	-		SO1419	0.63	-0.3
1,477,938	-		SO1419	0.64	+0.9
1,477,947	+		SO1419	0.65	-0.6
1,477,947	+		SO1419	0.65	+0.1
1,477,955	-		SO1419	0.65	-2.2
1,477,955	-		SO1419	0.65	-0.6
1,478,018	+		SO1419	0.70	+1.5
1,478,018	+		SO1419	0.70	+2.5
1,478,018	+		SO1419	0.70	+1.6
1,478,018	+		SO1419	0.70	-0.8
1,478,018	+		SO1419	0.70	-1.0
1,478,018	+		SO1419	0.70	-0.5
1,478,024	+		SO1419	0.71	+0.1
1,478,026	-		SO1419	0.71	+0.8
1,478,026	-		SO1419	0.71	-0.7
1,478,026	-		SO1419	0.71	-0.4
1,478,026	-		SO1419	0.71	-0.0
1,478,026	-		SO1419	0.71	-1.6
1,478,026	-		SO1419	0.71	-0.3
1,478,030	+		SO1419	0.71	-1.4
1,478,069	+		SO1419	0.74	-0.4
1,478,077	-		SO1419	0.75	+1.0
1,478,077	-		SO1419	0.75	-1.2
1,478,109	+		SO1419	0.77	-2.3
1,478,198	+		SO1419	0.83	+0.5
1,478,253	+		SO1419	0.88	-0.1
1,478,319	+				-1.5
1,478,327	-				+0.6
1,478,356	+				+1.0
1,478,381	+				-1.2
1,478,403	+				-2.2
1,478,403	+				-0.9
1,478,403	+				+0.1
1,478,403	+				+0.0
1,478,403	+				-1.3
1,478,403	+				-0.4
1,478,403	+				-0.2
1,478,403	+				-1.5
1,478,403	+				+0.1
1,478,403	+				-0.7
1,478,403	+				-0.9
1,478,403	+				+0.2
1,478,405	+				+0.9
1,478,411	-				-0.4
1,478,411	-				+0.2
1,478,411	-				+0.1
1,478,411	-				-0.6
1,478,411	-				+0.5
1,478,411	-				+2.3
1,478,411	-				+0.1
1,478,411	-				+0.3
1,478,411	-				-0.4
1,478,411	-				-1.2
1,478,411	-				-1.8
1,478,413	+				+1.2
1,478,418	+				+0.7
1,478,421	-				-1.4
1,478,426	-				+1.4
1,478,470	+				+1.3
1,478,470	+				-0.1
1,478,470	+				+1.4
1,478,470	+				+0.3
1,478,470	+				+1.2
1,478,470	+				-0.0
1,478,470	+				+0.6
1,478,470	+				-2.5
1,478,470	+				-0.3
1,478,470	+				+2.3
1,478,470	+				-1.4
1,478,470	+				+0.1
1,478,470	+				-0.9
1,478,470	+				+0.9
1,478,470	+				+0.2
1,478,470	+				+2.7
1,478,471	-				-1.5
1,478,471	-				-1.1
1,478,477	+				-1.8
1,478,477	+				+0.2
1,478,477	+				+0.8
1,478,477	+				+0.2
1,478,478	-				-1.8
1,478,478	-				-0.1
1,478,478	-				-0.1
1,478,478	-				+1.3
1,478,478	-				+0.1
1,478,478	-				+0.8
1,478,478	-				+1.2
1,478,478	-				-1.1
1,478,478	-				-1.2
1,478,478	-				-0.9
1,478,478	-				+0.2
1,478,478	-				-0.4
1,478,478	-				-1.8
1,478,478	-				+3.0
1,478,478	-				-0.4
1,478,480	+				+0.6
1,478,480	+				+0.0
1,478,482	+				-0.3
1,478,482	+				+1.6
1,478,482	+				-0.6
1,478,482	+				-1.4
1,478,482	+				-1.9
1,478,482	+				-0.9
1,478,482	+				+1.4
1,478,482	+				-1.2
1,478,482	+				-0.4
1,478,482	+				-1.6
1,478,482	+				-0.4
1,478,482	+				-0.0
1,478,482	+				+2.1
1,478,482	+				-0.5
1,478,482	+				+2.1
1,478,482	+				-0.5
1,478,482	+				+0.9
1,478,482	+				+0.4
1,478,482	+				+1.9
1,478,482	+				-0.1
1,478,482	+				-0.8
1,478,482	+				-2.9
1,478,482	+				+0.5
1,478,482	+				-0.9
1,478,482	+				-2.0
1,478,482	+				-1.3
1,478,482	+				-0.4
1,478,482	+				-0.4
1,478,482	+				+1.2
1,478,482	+				-0.4
1,478,482	+				+0.3
1,478,482	+				+1.7
1,478,482	+				+0.1
1,478,482	+				-1.7
1,478,482	+				+1.3
1,478,482	+				+0.2
1,478,482	+				-0.9
1,478,482	+				+0.1
1,478,482	+				+1.0
1,478,482	+				+0.8
1,478,482	+				+1.2
1,478,487	+				+0.1
1,478,487	+				+0.1
1,478,487	+				+0.5
1,478,487	+				-0.8
1,478,488	-				+0.8
1,478,488	-				-0.5
1,478,490	-				-1.3
1,478,490	-				+0.2
1,478,490	-				+1.0
1,478,490	-				-0.5
1,478,490	-				+0.9
1,478,490	-				-2.8
1,478,490	-				-0.4
1,478,490	-				-1.6
1,478,490	-				-2.5
1,478,490	-				+0.4
1,478,490	-				-0.6
1,478,490	-				-1.1
1,478,490	-				-1.3
1,478,490	-				+1.8
1,478,490	-				+1.0
1,478,490	-				-0.5
1,478,490	-				+1.2
1,478,490	-				+0.3
1,478,490	-				-0.7
1,478,490	-				-0.9
1,478,490	-				-0.7
1,478,490	-				-0.1
1,478,490	-				+0.5
1,478,490	-				-0.1
1,478,490	-				+0.3
1,478,490	-				+2.0
1,478,490	-				+1.0
1,478,490	-				+1.6
1,478,490	-				+1.1
1,478,490	-				+1.6
1,478,490	-				+0.4
1,478,492	+				-0.1
1,478,492	+				+0.6
1,478,492	+				-2.7
1,478,492	+				-0.6
1,478,492	+				+0.1
1,478,500	-				-2.4
1,478,500	-				+1.1
1,478,500	-				-0.4
1,478,500	-				+1.4
1,478,597	-		SO1420	0.15	-0.1
1,478,633	-		SO1420	0.19	-1.4
1,478,666	+		SO1420	0.22	+1.3
1,478,673	-		SO1420	0.23	+2.0
1,478,690	+		SO1420	0.24	+0.0
1,478,690	-		SO1420	0.24	+1.1
1,478,691	+		SO1420	0.24	+0.6
1,478,691	+		SO1420	0.24	+0.0
1,478,698	-		SO1420	0.25	-0.7
1,478,699	-		SO1420	0.25	-0.2
1,478,699	-		SO1420	0.25	+0.0
1,478,699	-		SO1420	0.25	-0.3
1,478,699	-		SO1420	0.25	+1.1
1,478,704	-		SO1420	0.26	-1.7
1,478,725	+		SO1420	0.28	-2.1
1,478,731	+		SO1420	0.28	+0.3
1,478,733	-		SO1420	0.28	-0.9
1,478,740	+		SO1420	0.29	+0.6
1,478,740	+		SO1420	0.29	-0.7
1,478,740	+		SO1420	0.29	+0.7
1,478,747	+		SO1420	0.30	+1.0
1,478,748	-		SO1420	0.30	-0.1
1,478,748	-		SO1420	0.30	-0.8
1,478,748	-		SO1420	0.30	-0.4
1,478,755	-		SO1420	0.30	+1.3
1,478,760	-		SO1420	0.31	-0.9
1,478,772	-		SO1420	0.32	-1.3
1,478,780	+		SO1420	0.33	-0.7
1,478,801	+		SO1420	0.35	-0.3
1,478,801	+		SO1420	0.35	-1.4
1,478,808	+		SO1420	0.36	+1.1
1,478,809	-		SO1420	0.36	+0.4
1,478,815	-		SO1420	0.36	-2.3
1,478,815	-		SO1420	0.36	-2.9
1,478,844	-		SO1420	0.39	-0.0
1,478,844	-		SO1420	0.39	-0.6
1,478,844	-		SO1420	0.39	-0.9
1,478,865	+		SO1420	0.41	+2.0
1,478,870	+		SO1420	0.42	-0.0
1,478,873	-		SO1420	0.42	-1.0
1,478,875	+		SO1420	0.42	-1.5
1,478,878	-		SO1420	0.42	-3.0
1,478,878	-		SO1420	0.42	-1.7
1,478,878	-		SO1420	0.42	-0.7
1,478,883	-		SO1420	0.43	-0.3
1,479,053	+		SO1420	0.59	-1.4
1,479,067	+		SO1420	0.61	-2.3
1,479,069	+		SO1420	0.61	-1.1
1,479,075	-		SO1420	0.61	-1.1
1,479,077	+		SO1420	0.61	-1.4
1,479,077	+		SO1420	0.61	-0.3
1,479,077	+		SO1420	0.61	-1.5
1,479,077	-		SO1420	0.61	-1.0
1,479,083	+		SO1420	0.62	-0.7
1,479,085	-		SO1420	0.62	-1.5
1,479,085	-		SO1420	0.62	-0.5
1,479,085	-		SO1420	0.62	+0.8
1,479,085	-		SO1420	0.62	-0.6
1,479,097	-		SO1420	0.63	-0.1
1,479,192	+		SO1420	0.73	-0.2
1,479,192	+		SO1420	0.73	+0.0
1,479,193	+		SO1420	0.73	-1.4
1,479,201	-		SO1420	0.73	-0.9
1,479,226	-		SO1420	0.76	+0.5
1,479,226	-		SO1420	0.76	-0.5
1,479,228	+		SO1420	0.76	-0.4
1,479,406	+				-1.1
1,479,407	+				-0.3
1,479,414	-				-0.1
1,479,444	+				+0.5
1,479,451	+				-1.1
1,479,451	+				-0.1
1,479,459	-				-1.1
1,479,464	-				-0.5
1,479,470	-				-1.0
1,479,481	+				+1.2
1,479,489	-				+0.7
1,479,489	-				-0.8
1,479,505	+				-0.5
1,479,523	-				+0.3
1,479,534	-				-1.5
1,479,535	+				-0.6
1,479,555	+				+0.3
1,479,555	+				+1.0
1,479,570	-				-0.9
1,479,572	+				+0.9
1,479,654	+				-0.3
1,479,682	+				+2.4
1,479,690	+				+0.3
1,479,690	+				-1.8
1,479,697	+				-1.5
1,479,697	+				+0.3
1,479,697	+				+0.7
1,479,697	+				-0.2
1,479,705	-				-1.6
1,479,751	+				-0.4
1,479,759	-				+0.3
1,479,799	+	ifcA-1	SO1421	0.11	-2.3
1,479,810	+	ifcA-1	SO1421	0.12	-1.4
1,479,852	+	ifcA-1	SO1421	0.14	+1.4
1,479,852	+	ifcA-1	SO1421	0.14	-0.6
1,479,866	+	ifcA-1	SO1421	0.15	+0.9
1,479,936	+	ifcA-1	SO1421	0.19	+1.5
1,479,959	+	ifcA-1	SO1421	0.20	-2.4
1,479,959	-	ifcA-1	SO1421	0.20	+0.3
1,480,013	+	ifcA-1	SO1421	0.23	-0.7
1,480,023	+	ifcA-1	SO1421	0.24	+0.4
1,480,026	-	ifcA-1	SO1421	0.24	+0.6
1,480,036	-	ifcA-1	SO1421	0.25	+0.4
1,480,062	+	ifcA-1	SO1421	0.26	+0.6
1,480,095	+	ifcA-1	SO1421	0.28	-1.3
1,480,096	-	ifcA-1	SO1421	0.28	+0.1
1,480,107	+	ifcA-1	SO1421	0.29	-0.7
1,480,107	+	ifcA-1	SO1421	0.29	+0.1
1,480,107	+	ifcA-1	SO1421	0.29	-0.5
1,480,111	-	ifcA-1	SO1421	0.29	+0.2
1,480,127	-	ifcA-1	SO1421	0.30	-1.2
1,480,145	-	ifcA-1	SO1421	0.31	+1.2
1,480,173	-	ifcA-1	SO1421	0.32	-2.5
1,480,181	-	ifcA-1	SO1421	0.33	-0.2
1,480,232	-	ifcA-1	SO1421	0.36	+0.4
1,480,271	-	ifcA-1	SO1421	0.38	+0.3
1,480,311	-	ifcA-1	SO1421	0.40	+0.5
1,480,384	+	ifcA-1	SO1421	0.44	-1.8
1,480,436	+	ifcA-1	SO1421	0.47	-1.3
1,480,474	+	ifcA-1	SO1421	0.49	+0.3