Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0920 and SO0921 are separated by 223 nucleotides SO0921 and SO0922 are separated by 210 nucleotides SO0922 and SO0923 are separated by 84 nucleotides SO0923 and SO0924 are separated by 70 nucleotides SO0924 and SO0925 are separated by 15 nucleotides
SO0920: SO0920 - acetyltransferase, GNAT family (NCBI ptt file), at 950,736 to 951,179
SO0920
SO0921: SO0921 - hypothetical protein (NCBI ptt file), at 951,403 to 951,699
SO0921
SO0922: SO0922 - proton/glutamate symporter (NCBI ptt file), at 951,910 to 953,184
SO0922
SO0923: SO0923 - conserved hypothetical protein (NCBI ptt file), at 953,269 to 953,685
SO0923
SO0924: SO0924 - hypothetical protein (NCBI ptt file), at 953,756 to 953,989
SO0924
SO0925: SO0925 - GGDEF domain protein (NCBI ptt file), at 954,005 to 955,012
SO0925
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 951.224 kb on - strand at 951.235 kb on - strand at 951.265 kb on + strand at 951.273 kb on - strand at 951.278 kb on - strand at 951.278 kb on - strand at 951.278 kb on - strand at 951.349 kb on + strand at 951.357 kb on - strand at 951.393 kb on - strand at 951.580 kb on + strand, within SO0921 at 951.588 kb on - strand, within SO0921 at 951.623 kb on + strand, within SO0921 at 951.651 kb on - strand, within SO0921 at 951.754 kb on - strand at 951.761 kb on - strand at 951.802 kb on - strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.816 kb on + strand at 951.822 kb on + strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.824 kb on - strand at 951.830 kb on - strand at 951.853 kb on + strand at 951.861 kb on - strand at 951.861 kb on - strand at 951.883 kb on + strand at 951.891 kb on - strand at 951.912 kb on - strand at 952.143 kb on + strand, within SO0922 at 952.151 kb on - strand, within SO0922 at 952.151 kb on - strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.165 kb on + strand, within SO0922 at 952.166 kb on + strand, within SO0922 at 952.166 kb on + strand, within SO0922 at 952.166 kb on + strand, within SO0922 at 952.173 kb on - strand, within SO0922 at 952.174 kb on - strand, within SO0922 at 952.177 kb on + strand, within SO0922 at 952.177 kb on + strand, within SO0922 at 952.185 kb on - strand, within SO0922 at 952.201 kb on + strand, within SO0922 at 952.391 kb on - strand, within SO0922 at 952.474 kb on + strand, within SO0922 at 952.617 kb on + strand, within SO0922 at 952.625 kb on - strand, within SO0922 at 952.642 kb on + strand, within SO0922 at 952.705 kb on + strand, within SO0922 at 952.705 kb on + strand, within SO0922 at 952.713 kb on - strand, within SO0922 at 952.759 kb on + strand, within SO0922 at 952.759 kb on + strand, within SO0922 at 952.767 kb on - strand, within SO0922 at 952.767 kb on - strand, within SO0922 at 952.799 kb on + strand, within SO0922 at 952.806 kb on - strand, within SO0922 at 952.849 kb on + strand, within SO0922 at 952.938 kb on - strand, within SO0922 at 952.944 kb on + strand, within SO0922 at 952.953 kb on + strand, within SO0922 at 952.954 kb on - strand, within SO0922 at 952.960 kb on + strand, within SO0922 at 952.961 kb on - strand, within SO0922 at 952.966 kb on + strand, within SO0922 at 952.973 kb on - strand, within SO0922 at 953.114 kb on - strand at 953.129 kb on + strand at 953.166 kb on - strand at 953.178 kb on + strand at 953.339 kb on + strand, within SO0923 at 953.366 kb on - strand, within SO0923 at 953.366 kb on - strand, within SO0923 at 953.391 kb on + strand, within SO0923 at 953.503 kb on + strand, within SO0923 at 953.527 kb on + strand, within SO0923 at 953.542 kb on + strand, within SO0923 at 953.560 kb on + strand, within SO0923 at 953.560 kb on + strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.608 kb on - strand, within SO0923 at 953.611 kb on - strand, within SO0923 at 953.634 kb on - strand, within SO0923 at 953.652 kb on + strand at 953.720 kb on + strand at 953.805 kb on + strand, within SO0924 at 953.862 kb on + strand, within SO0924 at 953.862 kb on + strand, within SO0924 at 953.911 kb on - strand, within SO0924 at 953.915 kb on + strand, within SO0924 at 953.915 kb on + strand, within SO0924 at 953.964 kb on + strand, within SO0924 at 953.984 kb on + strand at 954.003 kb on + strand at 954.013 kb on - strand at 954.077 kb on + strand at 954.080 kb on - strand at 954.124 kb on + strand, within SO0925
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 951,224 - +0.7 951,235 - -2.5 951,265 + +2.5 951,273 - -0.8 951,278 - -2.4 951,278 - +0.7 951,278 - -0.6 951,349 + -0.6 951,357 - +1.5 951,393 - +0.1 951,580 + SO0921 0.60 -1.1 951,588 - SO0921 0.62 -1.1 951,623 + SO0921 0.74 +0.8 951,651 - SO0921 0.84 +0.7 951,754 - -0.4 951,761 - -0.4 951,802 - -2.1 951,816 + -0.1 951,816 + +1.2 951,816 + +0.6 951,816 + +0.3 951,816 + -3.1 951,816 + -0.3 951,816 + +1.3 951,816 + +1.1 951,816 + +0.7 951,816 + +1.0 951,816 + +0.6 951,816 + -1.4 951,822 + -0.3 951,824 - -0.1 951,824 - -0.9 951,824 - -0.3 951,824 - -3.2 951,824 - -2.8 951,824 - -0.7 951,824 - +1.3 951,824 - -2.0 951,824 - +0.3 951,830 - +0.3 951,853 + -1.1 951,861 - +1.3 951,861 - -0.9 951,883 + -0.4 951,891 - -1.2 951,912 - +0.4 952,143 + SO0922 0.18 +0.6 952,151 - SO0922 0.19 -2.1 952,151 - SO0922 0.19 -0.1 952,165 + SO0922 0.20 -1.1 952,165 + SO0922 0.20 +0.1 952,165 + SO0922 0.20 +0.7 952,165 + SO0922 0.20 +0.2 952,165 + SO0922 0.20 +0.8 952,166 + SO0922 0.20 -1.0 952,166 + SO0922 0.20 -0.1 952,166 + SO0922 0.20 +1.1 952,173 - SO0922 0.21 -1.2 952,174 - SO0922 0.21 -0.2 952,177 + SO0922 0.21 +0.2 952,177 + SO0922 0.21 -1.9 952,185 - SO0922 0.22 -1.2 952,201 + SO0922 0.23 -3.5 952,391 - SO0922 0.38 -0.6 952,474 + SO0922 0.44 +1.3 952,617 + SO0922 0.55 -0.1 952,625 - SO0922 0.56 -0.9 952,642 + SO0922 0.57 +2.6 952,705 + SO0922 0.62 -2.5 952,705 + SO0922 0.62 -0.7 952,713 - SO0922 0.63 +1.3 952,759 + SO0922 0.67 -0.1 952,759 + SO0922 0.67 -1.3 952,767 - SO0922 0.67 -2.6 952,767 - SO0922 0.67 +0.6 952,799 + SO0922 0.70 +1.0 952,806 - SO0922 0.70 -0.6 952,849 + SO0922 0.74 +0.4 952,938 - SO0922 0.81 -0.5 952,944 + SO0922 0.81 +1.0 952,953 + SO0922 0.82 -0.5 952,954 - SO0922 0.82 -1.4 952,960 + SO0922 0.82 +0.2 952,961 - SO0922 0.82 -1.3 952,966 + SO0922 0.83 -0.2 952,973 - SO0922 0.83 +0.3 953,114 - +1.0 953,129 + -1.9 953,166 - +0.9 953,178 + +0.3 953,339 + SO0923 0.17 +0.2 953,366 - SO0923 0.23 +0.6 953,366 - SO0923 0.23 -1.2 953,391 + SO0923 0.29 +1.1 953,503 + SO0923 0.56 -0.4 953,527 + SO0923 0.62 +0.8 953,542 + SO0923 0.65 +0.4 953,560 + SO0923 0.70 -2.7 953,560 + SO0923 0.70 +0.1 953,568 - SO0923 0.72 +0.2 953,568 - SO0923 0.72 +0.0 953,568 - SO0923 0.72 +0.8 953,568 - SO0923 0.72 -1.0 953,568 - SO0923 0.72 -0.0 953,568 - SO0923 0.72 -1.6 953,608 - SO0923 0.81 +0.4 953,611 - SO0923 0.82 +0.0 953,634 - SO0923 0.88 -0.7 953,652 + -1.0 953,720 + -0.5 953,805 + SO0924 0.21 +1.6 953,862 + SO0924 0.45 +0.1 953,862 + SO0924 0.45 +2.1 953,911 - SO0924 0.66 +0.4 953,915 + SO0924 0.68 -0.9 953,915 + SO0924 0.68 -0.4 953,964 + SO0924 0.89 +0.1 953,984 + +0.8 954,003 + -1.1 954,013 - +0.1 954,077 + +0.6 954,080 - +0.3 954,124 + SO0925 0.12 +0.5
Or see this region's nucleotide sequence