Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0915 and SO0916 are separated by 274 nucleotides SO0916 and SO0917 are separated by 154 nucleotides SO0917 and aac are separated by 282 nucleotides
SO0915: SO0915 - ankyrin domain protein (NCBI ptt file), at 941,756 to 944,206
SO0915
SO0916: SO0916 - transcriptional regulator, MarR family (NCBI ptt file), at 944,481 to 945,410
SO0916
SO0917: SO0917 - conserved hypothetical protein TIGR00258 (NCBI ptt file), at 945,565 to 946,104
SO0917
SO0918: aac - aculeacin A acylase (NCBI ptt file), at 946,387 to 948,954
aac
Position (kb) 944
945
946 Strain fitness (log2 ratio) -2
-1
0
1
2 at 943.546 kb on + strand, within SO0915 at 943.577 kb on + strand, within SO0915 at 943.577 kb on + strand, within SO0915 at 943.577 kb on + strand, within SO0915 at 943.577 kb on + strand, within SO0915 at 943.585 kb on - strand, within SO0915 at 943.585 kb on - strand, within SO0915 at 943.585 kb on - strand, within SO0915 at 943.585 kb on - strand, within SO0915 at 943.585 kb on - strand, within SO0915 at 943.587 kb on + strand, within SO0915 at 943.587 kb on + strand, within SO0915 at 943.587 kb on + strand, within SO0915 at 943.595 kb on - strand, within SO0915 at 943.773 kb on - strand, within SO0915 at 943.779 kb on - strand, within SO0915 at 943.779 kb on - strand, within SO0915 at 943.817 kb on + strand, within SO0915 at 943.827 kb on + strand, within SO0915 at 943.885 kb on + strand, within SO0915 at 943.908 kb on + strand, within SO0915 at 943.909 kb on + strand, within SO0915 at 943.910 kb on - strand, within SO0915 at 944.008 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.028 kb on - strand at 944.042 kb on + strand at 944.042 kb on + strand at 944.050 kb on - strand at 944.133 kb on + strand at 944.133 kb on + strand at 944.133 kb on + strand at 944.133 kb on + strand at 944.141 kb on - strand at 944.141 kb on - strand at 944.141 kb on - strand at 944.141 kb on - strand at 944.141 kb on - strand at 944.367 kb on + strand at 944.447 kb on + strand at 944.460 kb on + strand at 944.468 kb on - strand at 944.490 kb on + strand at 944.565 kb on + strand at 944.567 kb on - strand at 944.620 kb on - strand, within SO0916 at 944.625 kb on + strand, within SO0916 at 944.652 kb on + strand, within SO0916 at 944.772 kb on + strand, within SO0916 at 944.780 kb on - strand, within SO0916 at 944.864 kb on + strand, within SO0916 at 944.879 kb on - strand, within SO0916 at 944.995 kb on + strand, within SO0916 at 945.043 kb on + strand, within SO0916 at 945.043 kb on + strand, within SO0916 at 945.043 kb on + strand, within SO0916 at 945.051 kb on - strand, within SO0916 at 945.251 kb on + strand, within SO0916 at 945.289 kb on + strand, within SO0916 at 945.289 kb on + strand, within SO0916 at 945.297 kb on - strand, within SO0916 at 945.302 kb on - strand, within SO0916 at 945.331 kb on + strand at 945.342 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.391 kb on - strand at 945.391 kb on - strand at 945.615 kb on - strand at 945.645 kb on + strand, within SO0917 at 945.653 kb on - strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.769 kb on + strand, within SO0917 at 945.769 kb on + strand, within SO0917 at 945.777 kb on - strand, within SO0917 at 945.801 kb on - strand, within SO0917 at 945.980 kb on - strand, within SO0917 at 945.980 kb on - strand, within SO0917 at 946.161 kb on + strand at 946.161 kb on + strand at 946.271 kb on + strand at 946.274 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 943,546 + SO0915 0.73 +0.6 943,577 + SO0915 0.74 -0.9 943,577 + SO0915 0.74 -0.3 943,577 + SO0915 0.74 -0.0 943,577 + SO0915 0.74 -0.9 943,585 - SO0915 0.75 -0.9 943,585 - SO0915 0.75 -0.4 943,585 - SO0915 0.75 +0.3 943,585 - SO0915 0.75 -2.6 943,585 - SO0915 0.75 +0.5 943,587 + SO0915 0.75 +1.8 943,587 + SO0915 0.75 -1.2 943,587 + SO0915 0.75 +0.7 943,595 - SO0915 0.75 +0.1 943,773 - SO0915 0.82 -0.3 943,779 - SO0915 0.83 +0.7 943,779 - SO0915 0.83 -0.5 943,817 + SO0915 0.84 -2.1 943,827 + SO0915 0.84 +0.2 943,885 + SO0915 0.87 +0.8 943,908 + SO0915 0.88 -2.6 943,909 + SO0915 0.88 -0.4 943,910 - SO0915 0.88 +0.5 944,008 + +2.5 944,020 + +0.5 944,020 + -1.3 944,028 - -1.6 944,042 + +2.0 944,042 + -0.1 944,050 - +1.6 944,133 + +1.3 944,133 + +1.0 944,133 + -0.8 944,133 + -1.7 944,141 - +1.5 944,141 - +0.1 944,141 - -1.4 944,141 - -0.4 944,141 - +1.6 944,367 + +1.0 944,447 + -0.2 944,460 + -0.8 944,468 - +0.4 944,490 + -1.2 944,565 + -0.2 944,567 - +0.8 944,620 - SO0916 0.15 -0.0 944,625 + SO0916 0.15 +0.3 944,652 + SO0916 0.18 -2.3 944,772 + SO0916 0.31 -0.2 944,780 - SO0916 0.32 -0.2 944,864 + SO0916 0.41 -2.1 944,879 - SO0916 0.43 -1.5 944,995 + SO0916 0.55 +0.8 945,043 + SO0916 0.60 +0.5 945,043 + SO0916 0.60 -0.1 945,043 + SO0916 0.60 -0.8 945,051 - SO0916 0.61 -1.3 945,251 + SO0916 0.83 -1.7 945,289 + SO0916 0.87 -1.9 945,289 + SO0916 0.87 -0.6 945,297 - SO0916 0.88 +0.1 945,302 - SO0916 0.88 +0.9 945,331 + +2.2 945,342 + +1.6 945,383 + +0.1 945,383 + -2.6 945,383 + -1.1 945,391 - -1.7 945,391 - -1.1 945,615 - -1.1 945,645 + SO0917 0.15 +0.8 945,653 - SO0917 0.16 -0.2 945,695 + SO0917 0.24 -2.1 945,695 + SO0917 0.24 +2.1 945,695 + SO0917 0.24 -0.1 945,721 + SO0917 0.29 -1.1 945,721 + SO0917 0.29 -1.7 945,721 + SO0917 0.29 -1.8 945,769 + SO0917 0.38 +0.5 945,769 + SO0917 0.38 +0.1 945,777 - SO0917 0.39 -1.7 945,801 - SO0917 0.44 +1.1 945,980 - SO0917 0.77 -0.2 945,980 - SO0917 0.77 +0.9 946,161 + +0.8 946,161 + -1.6 946,271 + -0.5 946,274 + -0.5
Or see this region's nucleotide sequence