Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0798 and SO0799 are separated by 149 nucleotides SO0799 and SO0801 are separated by 146 nucleotides SO0801 and SO0802 are separated by 349 nucleotides
SO0798: SO0798 - conserved hypothetical protein (NCBI ptt file), at 810,487 to 812,649
SO0798
SO0799: SO0799 - conserved hypothetical protein (NCBI ptt file), at 812,799 to 813,281
SO0799
SO0801: SO0801 - conserved hypothetical protein (NCBI ptt file), at 813,428 to 814,342
SO0801
SO0802: SO0802 - MATE efflux family protein (NCBI ptt file), at 814,692 to 816,053
SO0802
Position (kb) 813
814
815 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 812.482 kb on + strand at 812.514 kb on + strand at 812.514 kb on + strand at 812.522 kb on - strand at 812.529 kb on - strand at 812.876 kb on - strand, within SO0799 at 812.910 kb on - strand, within SO0799 at 813.065 kb on + strand, within SO0799 at 813.068 kb on - strand, within SO0799 at 813.160 kb on + strand, within SO0799 at 813.160 kb on + strand, within SO0799 at 813.165 kb on - strand, within SO0799 at 813.165 kb on - strand, within SO0799 at 813.168 kb on - strand, within SO0799 at 813.168 kb on - strand, within SO0799 at 813.198 kb on - strand, within SO0799 at 813.236 kb on + strand at 813.236 kb on + strand at 813.244 kb on - strand at 813.244 kb on - strand at 813.305 kb on - strand at 813.342 kb on - strand at 813.388 kb on + strand at 813.396 kb on - strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.522 kb on - strand, within SO0801 at 813.522 kb on - strand, within SO0801 at 813.522 kb on - strand, within SO0801 at 813.522 kb on - strand, within SO0801 at 813.522 kb on - strand, within SO0801 at 813.602 kb on - strand, within SO0801 at 813.639 kb on - strand, within SO0801 at 813.675 kb on + strand, within SO0801 at 813.675 kb on + strand, within SO0801 at 813.683 kb on - strand, within SO0801 at 813.701 kb on + strand, within SO0801 at 813.708 kb on + strand, within SO0801 at 813.709 kb on - strand, within SO0801 at 813.860 kb on + strand, within SO0801 at 813.862 kb on - strand, within SO0801 at 813.915 kb on + strand, within SO0801 at 814.028 kb on + strand, within SO0801 at 814.211 kb on + strand, within SO0801 at 814.211 kb on + strand, within SO0801 at 814.249 kb on + strand, within SO0801 at 814.249 kb on + strand, within SO0801 at 814.249 kb on + strand, within SO0801 at 814.257 kb on - strand at 814.309 kb on + strand at 814.430 kb on - strand at 814.506 kb on - strand at 814.506 kb on - strand at 814.550 kb on + strand at 814.552 kb on - strand at 814.582 kb on - strand at 814.594 kb on - strand at 814.651 kb on + strand at 814.683 kb on + strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.711 kb on - strand at 814.713 kb on - strand at 814.721 kb on + strand at 814.737 kb on + strand at 814.857 kb on - strand, within SO0802 at 814.899 kb on + strand, within SO0802 at 814.908 kb on + strand, within SO0802 at 814.908 kb on + strand, within SO0802 at 814.914 kb on - strand, within SO0802 at 814.930 kb on - strand, within SO0802 at 814.942 kb on + strand, within SO0802 at 814.942 kb on + strand, within SO0802 at 814.942 kb on + strand, within SO0802 at 814.989 kb on + strand, within SO0802 at 815.059 kb on + strand, within SO0802 at 815.060 kb on + strand, within SO0802 at 815.060 kb on + strand, within SO0802 at 815.087 kb on - strand, within SO0802 at 815.132 kb on - strand, within SO0802 at 815.176 kb on + strand, within SO0802 at 815.176 kb on + strand, within SO0802 at 815.199 kb on - strand, within SO0802 at 815.210 kb on - strand, within SO0802 at 815.210 kb on - strand, within SO0802 at 815.244 kb on + strand, within SO0802 at 815.284 kb on + strand, within SO0802 at 815.303 kb on + strand, within SO0802
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 812,482 + -0.2 812,514 + +2.8 812,514 + +0.5 812,522 - +0.7 812,529 - -0.5 812,876 - SO0799 0.16 +0.1 812,910 - SO0799 0.23 +0.1 813,065 + SO0799 0.55 +0.7 813,068 - SO0799 0.56 +0.2 813,160 + SO0799 0.75 +1.3 813,160 + SO0799 0.75 -1.6 813,165 - SO0799 0.76 -0.1 813,165 - SO0799 0.76 -0.5 813,168 - SO0799 0.76 +0.8 813,168 - SO0799 0.76 +0.4 813,198 - SO0799 0.83 -0.2 813,236 + +0.7 813,236 + -0.5 813,244 - -1.4 813,244 - -0.6 813,305 - -1.3 813,342 - +0.3 813,388 + +0.1 813,396 - -0.7 813,514 + -1.5 813,514 + -0.1 813,514 + -0.7 813,514 + +0.0 813,514 + +1.0 813,514 + -1.2 813,522 - SO0801 0.10 -2.2 813,522 - SO0801 0.10 +2.5 813,522 - SO0801 0.10 +1.2 813,522 - SO0801 0.10 +0.3 813,522 - SO0801 0.10 +0.3 813,602 - SO0801 0.19 -0.9 813,639 - SO0801 0.23 +0.3 813,675 + SO0801 0.27 -0.2 813,675 + SO0801 0.27 +0.1 813,683 - SO0801 0.28 +0.7 813,701 + SO0801 0.30 -0.5 813,708 + SO0801 0.31 -1.0 813,709 - SO0801 0.31 -0.2 813,860 + SO0801 0.47 +0.2 813,862 - SO0801 0.47 +0.3 813,915 + SO0801 0.53 -0.0 814,028 + SO0801 0.66 +0.9 814,211 + SO0801 0.86 -1.2 814,211 + SO0801 0.86 +1.0 814,249 + SO0801 0.90 +0.9 814,249 + SO0801 0.90 +0.6 814,249 + SO0801 0.90 +0.2 814,257 - -2.1 814,309 + +0.0 814,430 - +3.3 814,506 - +0.0 814,506 - +0.4 814,550 + +1.0 814,552 - +0.0 814,582 - -0.4 814,594 - +1.1 814,651 + +0.6 814,683 + -1.9 814,691 - +0.5 814,691 - +1.0 814,691 - +0.3 814,691 - -1.3 814,711 - -0.1 814,713 - +0.2 814,721 + +0.1 814,737 + +0.1 814,857 - SO0802 0.12 -1.6 814,899 + SO0802 0.15 -0.2 814,908 + SO0802 0.16 -0.1 814,908 + SO0802 0.16 -0.7 814,914 - SO0802 0.16 -3.8 814,930 - SO0802 0.17 +1.3 814,942 + SO0802 0.18 -1.6 814,942 + SO0802 0.18 -0.4 814,942 + SO0802 0.18 -0.5 814,989 + SO0802 0.22 +1.0 815,059 + SO0802 0.27 -0.2 815,060 + SO0802 0.27 -0.5 815,060 + SO0802 0.27 +0.6 815,087 - SO0802 0.29 -1.0 815,132 - SO0802 0.32 -1.7 815,176 + SO0802 0.36 +0.6 815,176 + SO0802 0.36 +1.3 815,199 - SO0802 0.37 +0.6 815,210 - SO0802 0.38 -0.3 815,210 - SO0802 0.38 +0.6 815,244 + SO0802 0.41 +0.1 815,284 + SO0802 0.43 +0.1 815,303 + SO0802 0.45 -0.9
Or see this region's nucleotide sequence