Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0791 and SO0792 are separated by 256 nucleotides SO0792 and SO0793 are separated by 323 nucleotides SO0793 and SO0795 are separated by 635 nucleotides
SO0791: SO0791 - transcriptional regulator, LysR family (NCBI ptt file), at 804,249 to 805,112
SO0791
SO0792: SO0792 - conserved hypothetical protein (NCBI ptt file), at 805,369 to 805,758
SO0792
SO0793: SO0793 - hypothetical protein (NCBI ptt file), at 806,082 to 806,369
SO0793
SO0795: SO0795 - conserved hypothetical protein (NCBI ptt file), at 807,005 to 808,783
SO0795
Position (kb) 806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 805.139 kb on - strand at 805.147 kb on + strand at 805.147 kb on + strand at 805.155 kb on - strand at 805.349 kb on - strand at 805.351 kb on + strand at 805.388 kb on - strand at 805.525 kb on + strand, within SO0792 at 805.533 kb on + strand, within SO0792 at 805.533 kb on - strand, within SO0792 at 805.552 kb on + strand, within SO0792 at 805.553 kb on - strand, within SO0792 at 805.626 kb on + strand, within SO0792 at 805.676 kb on + strand, within SO0792 at 805.705 kb on + strand, within SO0792 at 805.715 kb on + strand, within SO0792 at 805.715 kb on + strand, within SO0792 at 805.753 kb on + strand at 806.142 kb on + strand, within SO0793 at 806.176 kb on + strand, within SO0793 at 806.178 kb on - strand, within SO0793 at 806.178 kb on - strand, within SO0793 at 806.178 kb on - strand, within SO0793 at 806.178 kb on - strand, within SO0793 at 806.203 kb on - strand, within SO0793 at 806.205 kb on - strand, within SO0793 at 806.205 kb on - strand, within SO0793 at 806.286 kb on + strand, within SO0793 at 806.294 kb on - strand, within SO0793 at 806.294 kb on - strand, within SO0793 at 806.351 kb on + strand at 806.351 kb on + strand at 806.351 kb on + strand at 806.359 kb on - strand at 806.363 kb on + strand at 806.371 kb on - strand at 806.521 kb on + strand at 806.613 kb on + strand at 806.622 kb on - strand at 806.670 kb on - strand at 806.787 kb on + strand at 806.922 kb on - strand at 807.033 kb on + strand at 807.041 kb on - strand at 807.062 kb on + strand at 807.137 kb on + strand at 807.138 kb on - strand at 807.145 kb on - strand at 807.158 kb on + strand at 807.212 kb on + strand, within SO0795 at 807.212 kb on + strand, within SO0795 at 807.289 kb on + strand, within SO0795 at 807.307 kb on + strand, within SO0795
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 805,139 - +0.3 805,147 + -0.2 805,147 + +0.8 805,155 - -0.9 805,349 - +0.4 805,351 + +1.5 805,388 - -0.2 805,525 + SO0792 0.40 -1.2 805,533 + SO0792 0.42 +0.3 805,533 - SO0792 0.42 +0.5 805,552 + SO0792 0.47 -1.3 805,553 - SO0792 0.47 +1.0 805,626 + SO0792 0.66 -0.3 805,676 + SO0792 0.79 -1.6 805,705 + SO0792 0.86 -0.3 805,715 + SO0792 0.89 +0.1 805,715 + SO0792 0.89 -1.0 805,753 + -1.6 806,142 + SO0793 0.21 -1.0 806,176 + SO0793 0.33 +0.4 806,178 - SO0793 0.33 -1.7 806,178 - SO0793 0.33 -1.2 806,178 - SO0793 0.33 -0.6 806,178 - SO0793 0.33 +0.3 806,203 - SO0793 0.42 +1.0 806,205 - SO0793 0.43 -1.2 806,205 - SO0793 0.43 -0.6 806,286 + SO0793 0.71 +0.1 806,294 - SO0793 0.74 +2.8 806,294 - SO0793 0.74 -0.3 806,351 + -1.2 806,351 + -3.3 806,351 + +2.1 806,359 - +0.1 806,363 + +0.5 806,371 - -3.6 806,521 + +1.7 806,613 + -0.7 806,622 - +0.4 806,670 - -2.5 806,787 + -0.2 806,922 - -0.3 807,033 + +0.4 807,041 - +0.2 807,062 + +0.1 807,137 + -2.6 807,138 - -0.3 807,145 - +1.2 807,158 + +0.2 807,212 + SO0795 0.12 +0.8 807,212 + SO0795 0.12 +0.5 807,289 + SO0795 0.16 -0.4 807,307 + SO0795 0.17 -1.8
Or see this region's nucleotide sequence