Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0714 and SO0715 are separated by 1 nucleotides SO0715 and SO0716 overlap by 1 nucleotides SO0716 and SO0717 overlap by 4 nucleotides SO0717 and SO0718 are separated by 94 nucleotides
SO0714: SO0714 - monoheme cytochrome c (NCBI ptt file), at 731,442 to 731,744
SO0714
SO0715: SO0715 - oxidoreductase, molybdopterin-binding (NCBI ptt file), at 731,746 to 732,972
SO0715
SO0716: SO0716 - monoheme cytochrome c, putative (NCBI ptt file), at 732,972 to 733,355
SO0716
SO0717: SO0717 - monoheme cytochrome c (NCBI ptt file), at 733,352 to 733,687
SO0717
SO0718: SO0718 - conserved hypothetical protein (NCBI ptt file), at 733,782 to 734,261
SO0718
Position (kb) 731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 730.840 kb on - strand at 730.939 kb on - strand at 731.025 kb on + strand at 731.063 kb on - strand at 731.105 kb on - strand at 731.113 kb on + strand at 731.207 kb on + strand at 731.208 kb on + strand at 731.553 kb on - strand, within SO0714 at 731.559 kb on + strand, within SO0714 at 731.559 kb on + strand, within SO0714 at 731.625 kb on + strand, within SO0714 at 731.640 kb on - strand, within SO0714 at 731.641 kb on - strand, within SO0714 at 731.681 kb on + strand, within SO0714 at 731.689 kb on - strand, within SO0714 at 731.689 kb on - strand, within SO0714 at 731.789 kb on + strand at 731.843 kb on - strand at 731.847 kb on + strand at 731.847 kb on + strand at 731.847 kb on + strand at 731.855 kb on - strand at 731.880 kb on + strand, within SO0715 at 731.922 kb on - strand, within SO0715 at 731.932 kb on - strand, within SO0715 at 731.952 kb on + strand, within SO0715 at 731.959 kb on - strand, within SO0715 at 731.960 kb on - strand, within SO0715 at 732.104 kb on + strand, within SO0715 at 732.138 kb on + strand, within SO0715 at 732.139 kb on - strand, within SO0715 at 732.139 kb on - strand, within SO0715 at 732.232 kb on - strand, within SO0715 at 732.239 kb on - strand, within SO0715 at 732.239 kb on - strand, within SO0715 at 732.308 kb on + strand, within SO0715 at 732.353 kb on + strand, within SO0715 at 732.363 kb on - strand, within SO0715 at 732.419 kb on + strand, within SO0715 at 732.419 kb on + strand, within SO0715 at 732.434 kb on + strand, within SO0715 at 732.442 kb on - strand, within SO0715 at 732.517 kb on + strand, within SO0715 at 732.525 kb on - strand, within SO0715 at 732.664 kb on + strand, within SO0715 at 732.685 kb on - strand, within SO0715 at 732.691 kb on - strand, within SO0715 at 732.705 kb on - strand, within SO0715 at 732.839 kb on + strand, within SO0715 at 732.883 kb on + strand at 732.891 kb on - strand at 732.933 kb on + strand at 732.933 kb on + strand at 732.941 kb on - strand at 732.958 kb on - strand at 732.964 kb on - strand at 733.010 kb on + strand at 733.170 kb on + strand, within SO0716 at 733.219 kb on + strand, within SO0716 at 733.227 kb on - strand, within SO0716 at 733.241 kb on + strand, within SO0716 at 733.271 kb on + strand, within SO0716 at 733.271 kb on + strand, within SO0716 at 733.283 kb on + strand, within SO0716 at 733.450 kb on + strand, within SO0717 at 733.457 kb on + strand, within SO0717 at 733.468 kb on - strand, within SO0717 at 733.571 kb on + strand, within SO0717 at 733.603 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.653 kb on - strand, within SO0717 at 733.655 kb on + strand at 733.655 kb on + strand at 733.677 kb on + strand at 733.750 kb on - strand at 733.855 kb on + strand, within SO0718 at 733.900 kb on - strand, within SO0718 at 733.909 kb on + strand, within SO0718 at 733.919 kb on + strand, within SO0718 at 733.919 kb on + strand, within SO0718 at 733.927 kb on - strand, within SO0718 at 733.927 kb on - strand, within SO0718 at 733.927 kb on - strand, within SO0718
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 730,840 - -1.1 730,939 - +2.9 731,025 + -0.5 731,063 - -1.1 731,105 - -2.0 731,113 + +0.8 731,207 + +0.9 731,208 + +1.4 731,553 - SO0714 0.37 +1.6 731,559 + SO0714 0.39 +0.0 731,559 + SO0714 0.39 -1.3 731,625 + SO0714 0.60 +0.3 731,640 - SO0714 0.65 -0.4 731,641 - SO0714 0.66 -0.4 731,681 + SO0714 0.79 -1.8 731,689 - SO0714 0.82 -1.1 731,689 - SO0714 0.82 +1.1 731,789 + -0.0 731,843 - +0.9 731,847 + -1.1 731,847 + -0.4 731,847 + +0.5 731,855 - -0.2 731,880 + SO0715 0.11 +0.4 731,922 - SO0715 0.14 -0.0 731,932 - SO0715 0.15 +1.2 731,952 + SO0715 0.17 +1.3 731,959 - SO0715 0.17 -0.4 731,960 - SO0715 0.17 +0.2 732,104 + SO0715 0.29 +0.8 732,138 + SO0715 0.32 +1.6 732,139 - SO0715 0.32 +1.0 732,139 - SO0715 0.32 +1.3 732,232 - SO0715 0.40 +1.9 732,239 - SO0715 0.40 -0.7 732,239 - SO0715 0.40 -0.6 732,308 + SO0715 0.46 +0.1 732,353 + SO0715 0.49 +0.9 732,363 - SO0715 0.50 +0.5 732,419 + SO0715 0.55 -0.4 732,419 + SO0715 0.55 -0.0 732,434 + SO0715 0.56 +1.1 732,442 - SO0715 0.57 -1.2 732,517 + SO0715 0.63 +0.4 732,525 - SO0715 0.63 -0.7 732,664 + SO0715 0.75 -0.8 732,685 - SO0715 0.77 -1.0 732,691 - SO0715 0.77 -0.6 732,705 - SO0715 0.78 +0.3 732,839 + SO0715 0.89 +1.1 732,883 + +2.5 732,891 - -1.6 732,933 + -1.7 732,933 + -2.2 732,941 - +2.8 732,958 - -0.8 732,964 - -0.2 733,010 + -0.4 733,170 + SO0716 0.52 +0.0 733,219 + SO0716 0.64 -0.2 733,227 - SO0716 0.66 +0.0 733,241 + SO0716 0.70 -3.6 733,271 + SO0716 0.78 +0.5 733,271 + SO0716 0.78 +1.0 733,283 + SO0716 0.81 -0.6 733,450 + SO0717 0.29 +0.1 733,457 + SO0717 0.31 +0.6 733,468 - SO0717 0.35 -0.2 733,571 + SO0717 0.65 +0.0 733,603 + SO0717 0.75 +0.5 733,645 + SO0717 0.87 +0.8 733,645 + SO0717 0.87 +1.3 733,645 + SO0717 0.87 -0.2 733,653 - SO0717 0.90 -0.2 733,655 + -1.7 733,655 + -1.4 733,677 + +1.2 733,750 - -0.9 733,855 + SO0718 0.15 +0.6 733,900 - SO0718 0.25 +0.4 733,909 + SO0718 0.26 +0.0 733,919 + SO0718 0.29 +0.7 733,919 + SO0718 0.29 +0.5 733,927 - SO0718 0.30 -1.8 733,927 - SO0718 0.30 +0.1 733,927 - SO0718 0.30 -0.7
Or see this region's nucleotide sequence