Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0695 and dsbD are separated by 152 nucleotides dsbD and cutA overlap by 4 nucleotides cutA and fsxA are separated by 222 nucleotides
SO0695: SO0695 - glutathione-regulated potassium-efflux system protein KefC, putative (NCBI ptt file), at 712,378 to 714,021
SO0695
SO0696: dsbD - thiol:disulfide interchange protein DsbD (NCBI ptt file), at 714,174 to 716,006
dsbD
SO0697: cutA - periplasmic divalent cation tolerance protein CutA (NCBI ptt file), at 716,003 to 716,326
cutA
SO0698: fsxA - fxsA protein (NCBI ptt file), at 716,549 to 717,112
fsxA
Position (kb) 714
715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 713.344 kb on + strand, within SO0695 at 713.379 kb on + strand, within SO0695 at 713.418 kb on - strand, within SO0695 at 713.436 kb on + strand, within SO0695 at 713.436 kb on + strand, within SO0695 at 713.444 kb on - strand, within SO0695 at 713.446 kb on + strand, within SO0695 at 713.446 kb on + strand, within SO0695 at 713.446 kb on + strand, within SO0695 at 713.454 kb on - strand, within SO0695 at 713.454 kb on - strand, within SO0695 at 713.454 kb on - strand, within SO0695 at 713.514 kb on - strand, within SO0695 at 713.619 kb on + strand, within SO0695 at 713.656 kb on + strand, within SO0695 at 713.670 kb on + strand, within SO0695 at 713.670 kb on + strand, within SO0695 at 713.670 kb on + strand, within SO0695 at 713.678 kb on - strand, within SO0695 at 713.699 kb on - strand, within SO0695 at 713.717 kb on - strand, within SO0695 at 713.801 kb on + strand, within SO0695 at 713.801 kb on + strand, within SO0695 at 713.809 kb on - strand, within SO0695 at 713.847 kb on + strand, within SO0695 at 713.855 kb on - strand, within SO0695 at 713.860 kb on - strand at 713.867 kb on - strand at 713.922 kb on + strand at 713.922 kb on + strand at 713.922 kb on + strand at 713.922 kb on + strand at 713.922 kb on + strand at 713.944 kb on + strand at 713.961 kb on + strand at 713.961 kb on + strand at 713.961 kb on + strand at 713.961 kb on + strand at 714.018 kb on + strand at 714.219 kb on + strand at 714.233 kb on + strand at 714.328 kb on + strand at 714.336 kb on - strand at 714.395 kb on + strand, within dsbD at 714.395 kb on + strand, within dsbD at 714.450 kb on - strand, within dsbD at 714.532 kb on - strand, within dsbD at 714.641 kb on - strand, within dsbD at 714.647 kb on - strand, within dsbD at 714.724 kb on - strand, within dsbD at 714.807 kb on + strand, within dsbD at 714.918 kb on - strand, within dsbD at 715.185 kb on + strand, within dsbD at 715.193 kb on - strand, within dsbD at 715.253 kb on - strand, within dsbD at 715.257 kb on + strand, within dsbD at 715.288 kb on - strand, within dsbD at 715.376 kb on + strand, within dsbD at 715.390 kb on - strand, within dsbD at 715.447 kb on - strand, within dsbD at 715.491 kb on + strand, within dsbD at 715.630 kb on - strand, within dsbD at 715.630 kb on - strand, within dsbD at 715.634 kb on + strand, within dsbD at 715.642 kb on - strand, within dsbD at 715.642 kb on - strand, within dsbD at 715.766 kb on - strand, within dsbD at 715.884 kb on - strand at 715.982 kb on + strand at 715.990 kb on - strand at 716.008 kb on + strand at 716.013 kb on + strand at 716.037 kb on - strand, within cutA at 716.039 kb on + strand, within cutA at 716.122 kb on - strand, within cutA at 716.127 kb on - strand, within cutA at 716.273 kb on + strand, within cutA at 716.326 kb on - strand at 716.326 kb on - strand at 716.328 kb on + strand at 716.331 kb on - strand at 716.467 kb on - strand at 716.603 kb on + strand at 716.643 kb on + strand, within fsxA at 716.643 kb on + strand, within fsxA at 716.643 kb on + strand, within fsxA at 716.650 kb on - strand, within fsxA at 716.662 kb on - strand, within fsxA at 716.662 kb on - strand, within fsxA at 716.669 kb on + strand, within fsxA at 716.687 kb on - strand, within fsxA at 716.779 kb on - strand, within fsxA at 716.935 kb on + strand, within fsxA at 716.939 kb on + strand, within fsxA at 716.947 kb on - strand, within fsxA at 716.981 kb on - strand, within fsxA at 716.998 kb on + strand, within fsxA
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 713,344 + SO0695 0.59 -0.5 713,379 + SO0695 0.61 +1.1 713,418 - SO0695 0.63 +0.5 713,436 + SO0695 0.64 -1.7 713,436 + SO0695 0.64 +0.1 713,444 - SO0695 0.65 +1.7 713,446 + SO0695 0.65 -1.6 713,446 + SO0695 0.65 +0.6 713,446 + SO0695 0.65 +1.3 713,454 - SO0695 0.65 +0.8 713,454 - SO0695 0.65 -1.2 713,454 - SO0695 0.65 +0.1 713,514 - SO0695 0.69 +0.1 713,619 + SO0695 0.75 +0.2 713,656 + SO0695 0.78 -0.1 713,670 + SO0695 0.79 -0.4 713,670 + SO0695 0.79 +0.5 713,670 + SO0695 0.79 +0.4 713,678 - SO0695 0.79 +4.8 713,699 - SO0695 0.80 -1.5 713,717 - SO0695 0.81 -0.4 713,801 + SO0695 0.87 -1.2 713,801 + SO0695 0.87 +0.6 713,809 - SO0695 0.87 -0.6 713,847 + SO0695 0.89 -0.1 713,855 - SO0695 0.90 -0.3 713,860 - -0.4 713,867 - -0.3 713,922 + -2.5 713,922 + -0.2 713,922 + -1.5 713,922 + -1.6 713,922 + -0.4 713,944 + +1.2 713,961 + -0.3 713,961 + +0.6 713,961 + +1.1 713,961 + +0.8 714,018 + -3.0 714,219 + -0.9 714,233 + -1.1 714,328 + -2.5 714,336 - -1.3 714,395 + dsbD SO0696 0.12 +1.9 714,395 + dsbD SO0696 0.12 -1.1 714,450 - dsbD SO0696 0.15 -2.1 714,532 - dsbD SO0696 0.20 +0.3 714,641 - dsbD SO0696 0.25 +0.3 714,647 - dsbD SO0696 0.26 -1.1 714,724 - dsbD SO0696 0.30 -1.8 714,807 + dsbD SO0696 0.35 -0.7 714,918 - dsbD SO0696 0.41 -1.6 715,185 + dsbD SO0696 0.55 -2.5 715,193 - dsbD SO0696 0.56 -1.3 715,253 - dsbD SO0696 0.59 -2.0 715,257 + dsbD SO0696 0.59 +0.9 715,288 - dsbD SO0696 0.61 +0.3 715,376 + dsbD SO0696 0.66 +0.9 715,390 - dsbD SO0696 0.66 -0.1 715,447 - dsbD SO0696 0.69 -0.1 715,491 + dsbD SO0696 0.72 -0.5 715,630 - dsbD SO0696 0.79 -1.7 715,630 - dsbD SO0696 0.79 -2.2 715,634 + dsbD SO0696 0.80 -3.1 715,642 - dsbD SO0696 0.80 -3.3 715,642 - dsbD SO0696 0.80 -0.5 715,766 - dsbD SO0696 0.87 -1.9 715,884 - +0.3 715,982 + -2.5 715,990 - -1.8 716,008 + -1.3 716,013 + -1.8 716,037 - cutA SO0697 0.10 +1.9 716,039 + cutA SO0697 0.11 -1.5 716,122 - cutA SO0697 0.37 -0.8 716,127 - cutA SO0697 0.38 -1.3 716,273 + cutA SO0697 0.83 +0.3 716,326 - +1.0 716,326 - +0.2 716,328 + -2.5 716,331 - +0.2 716,467 - +2.7 716,603 + +0.2 716,643 + fsxA SO0698 0.17 -1.3 716,643 + fsxA SO0698 0.17 -1.9 716,643 + fsxA SO0698 0.17 -2.0 716,650 - fsxA SO0698 0.18 -2.4 716,662 - fsxA SO0698 0.20 -1.4 716,662 - fsxA SO0698 0.20 +0.5 716,669 + fsxA SO0698 0.21 -1.7 716,687 - fsxA SO0698 0.24 +0.5 716,779 - fsxA SO0698 0.41 -0.3 716,935 + fsxA SO0698 0.68 -1.8 716,939 + fsxA SO0698 0.69 -0.2 716,947 - fsxA SO0698 0.71 -0.8 716,981 - fsxA SO0698 0.77 -0.4 716,998 + fsxA SO0698 0.80 -0.5
Or see this region's nucleotide sequence