Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tpm and bfd are separated by 223 nucleotides bfd and SO0584 are separated by 244 nucleotides SO0584 and SO0585 are separated by 84 nucleotides
SO0582: tpm - thiopurine S-methyltransferase (NCBI ptt file), at 608,019 to 608,675
tpm
SO0583: bfd - bacterioferritin-associated ferredoxin (NCBI ptt file), at 608,899 to 609,090
bfd
SO0584: SO0584 - methyl-accepting chemotaxis protein (NCBI ptt file), at 609,335 to 610,909
SO0584
SO0585: SO0585 - D-isomer specific 2-hydroxyacid dehydrogenase family protein (NCBI ptt file), at 610,994 to 611,929
SO0585
Position (kb) 609
610
611 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 608.359 kb on + strand, within tpm at 608.359 kb on + strand, within tpm at 608.359 kb on + strand, within tpm at 608.359 kb on + strand, within tpm at 608.367 kb on - strand, within tpm at 608.436 kb on - strand, within tpm at 608.464 kb on + strand, within tpm at 608.464 kb on + strand, within tpm at 608.472 kb on - strand, within tpm at 608.472 kb on - strand, within tpm at 608.509 kb on - strand, within tpm at 608.576 kb on + strand, within tpm at 608.642 kb on + strand at 608.776 kb on + strand at 608.833 kb on + strand at 608.833 kb on + strand at 608.874 kb on - strand at 608.947 kb on + strand, within bfd at 609.193 kb on - strand at 609.215 kb on + strand at 609.223 kb on - strand at 609.282 kb on + strand at 609.465 kb on + strand at 609.466 kb on - strand at 609.718 kb on + strand, within SO0584 at 609.718 kb on + strand, within SO0584 at 609.826 kb on + strand, within SO0584 at 609.828 kb on + strand, within SO0584 at 609.834 kb on - strand, within SO0584 at 609.836 kb on - strand, within SO0584 at 609.871 kb on - strand, within SO0584 at 609.927 kb on - strand, within SO0584 at 609.972 kb on + strand, within SO0584 at 609.972 kb on + strand, within SO0584 at 609.976 kb on + strand, within SO0584 at 609.984 kb on - strand, within SO0584 at 609.984 kb on - strand, within SO0584 at 610.052 kb on + strand, within SO0584 at 610.052 kb on + strand, within SO0584 at 610.052 kb on + strand, within SO0584 at 610.134 kb on + strand, within SO0584 at 610.223 kb on - strand, within SO0584 at 610.327 kb on - strand, within SO0584 at 610.535 kb on - strand, within SO0584 at 610.582 kb on + strand, within SO0584 at 610.590 kb on - strand, within SO0584 at 610.590 kb on - strand, within SO0584 at 610.590 kb on - strand, within SO0584 at 610.612 kb on + strand, within SO0584 at 610.656 kb on + strand, within SO0584 at 610.656 kb on + strand, within SO0584 at 610.656 kb on + strand, within SO0584 at 610.664 kb on - strand, within SO0584 at 610.860 kb on + strand at 610.876 kb on - strand at 610.896 kb on + strand at 611.000 kb on + strand at 611.179 kb on + strand, within SO0585 at 611.187 kb on - strand, within SO0585 at 611.280 kb on + strand, within SO0585 at 611.280 kb on + strand, within SO0585 at 611.288 kb on - strand, within SO0585 at 611.288 kb on - strand, within SO0585 at 611.288 kb on - strand, within SO0585 at 611.296 kb on + strand, within SO0585 at 611.304 kb on - strand, within SO0585 at 611.364 kb on - strand, within SO0585 at 611.366 kb on + strand, within SO0585 at 611.374 kb on - strand, within SO0585 at 611.380 kb on - strand, within SO0585 at 611.412 kb on - strand, within SO0585 at 611.430 kb on + strand, within SO0585 at 611.434 kb on + strand, within SO0585 at 611.560 kb on - strand, within SO0585 at 611.698 kb on + strand, within SO0585 at 611.765 kb on + strand, within SO0585 at 611.773 kb on - strand, within SO0585 at 611.793 kb on - strand, within SO0585 at 611.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 608,359 + tpm SO0582 0.52 -0.6 608,359 + tpm SO0582 0.52 +0.3 608,359 + tpm SO0582 0.52 -1.3 608,359 + tpm SO0582 0.52 +0.3 608,367 - tpm SO0582 0.53 +0.5 608,436 - tpm SO0582 0.63 +0.0 608,464 + tpm SO0582 0.68 -0.0 608,464 + tpm SO0582 0.68 -0.8 608,472 - tpm SO0582 0.69 -0.7 608,472 - tpm SO0582 0.69 +0.3 608,509 - tpm SO0582 0.75 -0.5 608,576 + tpm SO0582 0.85 +1.9 608,642 + -0.4 608,776 + -0.3 608,833 + +2.4 608,833 + +1.1 608,874 - +0.7 608,947 + bfd SO0583 0.25 -0.3 609,193 - +0.0 609,215 + +0.2 609,223 - +0.9 609,282 + +0.7 609,465 + +1.3 609,466 - +0.8 609,718 + SO0584 0.24 +1.1 609,718 + SO0584 0.24 +0.1 609,826 + SO0584 0.31 -1.1 609,828 + SO0584 0.31 -0.8 609,834 - SO0584 0.32 +0.8 609,836 - SO0584 0.32 +1.3 609,871 - SO0584 0.34 +0.7 609,927 - SO0584 0.38 +0.1 609,972 + SO0584 0.40 +1.4 609,972 + SO0584 0.40 -1.3 609,976 + SO0584 0.41 +0.4 609,984 - SO0584 0.41 +1.0 609,984 - SO0584 0.41 -0.7 610,052 + SO0584 0.46 -0.3 610,052 + SO0584 0.46 -2.6 610,052 + SO0584 0.46 +1.1 610,134 + SO0584 0.51 -2.3 610,223 - SO0584 0.56 -0.4 610,327 - SO0584 0.63 +2.6 610,535 - SO0584 0.76 +0.2 610,582 + SO0584 0.79 -0.1 610,590 - SO0584 0.80 -0.1 610,590 - SO0584 0.80 -0.5 610,590 - SO0584 0.80 -0.1 610,612 + SO0584 0.81 +1.2 610,656 + SO0584 0.84 +1.9 610,656 + SO0584 0.84 +2.7 610,656 + SO0584 0.84 +0.3 610,664 - SO0584 0.84 +0.4 610,860 + +2.6 610,876 - -0.0 610,896 + +0.5 611,000 + +0.1 611,179 + SO0585 0.20 +0.3 611,187 - SO0585 0.21 +0.8 611,280 + SO0585 0.31 -0.6 611,280 + SO0585 0.31 -2.0 611,288 - SO0585 0.31 +0.5 611,288 - SO0585 0.31 -0.9 611,288 - SO0585 0.31 +1.2 611,296 + SO0585 0.32 -1.7 611,304 - SO0585 0.33 -1.6 611,364 - SO0585 0.40 -0.8 611,366 + SO0585 0.40 +3.0 611,374 - SO0585 0.41 +0.6 611,380 - SO0585 0.41 +0.9 611,412 - SO0585 0.45 -0.1 611,430 + SO0585 0.47 +2.5 611,434 + SO0585 0.47 -0.5 611,560 - SO0585 0.60 -0.2 611,698 + SO0585 0.75 -0.8 611,765 + SO0585 0.82 +1.2 611,773 - SO0585 0.83 +0.2 611,793 - SO0585 0.85 +1.3 611,853 - +2.1
Or see this region's nucleotide sequence