Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0510 and accB are separated by 18 nucleotides accB and aroQ are separated by 37 nucleotides aroQ and SO0513 are separated by 101 nucleotides SO0513 and SO0514 are separated by 97 nucleotides
SO0510: SO0510 - oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file), at 535,321 to 535,998
SO0510
SO0511: accB - acetyl-CoA carboxylase, biotin carboxyl carrier protein (NCBI ptt file), at 536,017 to 536,475
accB
SO0512: aroQ - 3-dehydroquinate dehydratase, type II (NCBI ptt file), at 536,513 to 536,953
aroQ
SO0513: SO0513 - prokaryotic and mitochondrial release factors family protein (NCBI ptt file), at 537,055 to 537,468
SO0513
SO0514: SO0514 - hypothetical protein (NCBI ptt file), at 537,566 to 537,973
SO0514
Position (kb) 536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 535.520 kb on - strand, within SO0510 at 535.545 kb on - strand, within SO0510 at 535.562 kb on + strand, within SO0510 at 535.566 kb on + strand, within SO0510 at 535.606 kb on - strand, within SO0510 at 535.700 kb on + strand, within SO0510 at 535.708 kb on - strand, within SO0510 at 535.708 kb on - strand, within SO0510 at 535.710 kb on + strand, within SO0510 at 535.741 kb on - strand, within SO0510 at 535.752 kb on - strand, within SO0510 at 535.759 kb on + strand, within SO0510 at 535.875 kb on - strand, within SO0510 at 535.880 kb on - strand, within SO0510 at 535.883 kb on + strand, within SO0510 at 535.913 kb on + strand, within SO0510 at 535.918 kb on + strand, within SO0510 at 535.923 kb on + strand, within SO0510 at 535.926 kb on - strand, within SO0510 at 535.926 kb on - strand, within SO0510 at 535.928 kb on + strand, within SO0510 at 535.936 kb on - strand at 535.939 kb on + strand at 535.963 kb on + strand at 535.963 kb on + strand at 535.971 kb on - strand at 535.971 kb on - strand at 536.044 kb on + strand at 536.057 kb on - strand at 536.170 kb on - strand, within accB at 536.235 kb on + strand, within accB at 536.243 kb on - strand, within accB at 536.245 kb on + strand, within accB at 536.307 kb on + strand, within accB at 536.307 kb on + strand, within accB at 536.309 kb on + strand, within accB at 536.309 kb on + strand, within accB at 536.309 kb on + strand, within accB at 536.317 kb on - strand, within accB at 536.319 kb on + strand, within accB at 536.319 kb on + strand, within accB at 536.319 kb on + strand, within accB at 536.319 kb on + strand, within accB at 536.327 kb on - strand, within accB at 536.327 kb on - strand, within accB at 536.346 kb on - strand, within accB at 536.409 kb on + strand, within accB at 536.463 kb on + strand at 536.485 kb on - strand at 536.624 kb on + strand, within aroQ at 536.639 kb on + strand, within aroQ at 536.639 kb on + strand, within aroQ at 536.647 kb on - strand, within aroQ at 536.699 kb on + strand, within aroQ at 536.704 kb on + strand, within aroQ at 536.704 kb on + strand, within aroQ at 536.707 kb on - strand, within aroQ at 536.707 kb on - strand, within aroQ at 536.712 kb on - strand, within aroQ at 536.712 kb on - strand, within aroQ at 536.712 kb on - strand, within aroQ at 536.712 kb on - strand, within aroQ at 536.720 kb on + strand, within aroQ at 536.728 kb on - strand, within aroQ at 536.772 kb on + strand, within aroQ at 536.772 kb on + strand, within aroQ at 536.775 kb on - strand, within aroQ at 536.782 kb on + strand, within aroQ at 536.828 kb on + strand, within aroQ at 536.837 kb on - strand, within aroQ at 536.870 kb on + strand, within aroQ at 536.870 kb on + strand, within aroQ at 536.870 kb on + strand, within aroQ at 536.870 kb on + strand, within aroQ at 536.878 kb on - strand, within aroQ at 536.964 kb on + strand at 536.998 kb on + strand at 537.006 kb on - strand at 537.006 kb on - strand at 537.041 kb on + strand at 537.053 kb on + strand at 537.244 kb on - strand, within SO0513 at 537.324 kb on - strand, within SO0513 at 537.373 kb on - strand, within SO0513 at 537.468 kb on + strand at 537.515 kb on - strand at 537.554 kb on + strand at 537.554 kb on + strand at 537.562 kb on + strand at 537.562 kb on - strand at 537.602 kb on + strand at 537.602 kb on + strand at 537.603 kb on + strand at 537.603 kb on + strand at 537.610 kb on - strand, within SO0514 at 537.611 kb on - strand, within SO0514 at 537.611 kb on - strand, within SO0514 at 537.678 kb on - strand, within SO0514 at 537.849 kb on + strand, within SO0514 at 537.862 kb on + strand, within SO0514
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 535,520 - SO0510 0.29 -1.6 535,545 - SO0510 0.33 -2.5 535,562 + SO0510 0.36 +0.1 535,566 + SO0510 0.36 -1.7 535,606 - SO0510 0.42 -1.8 535,700 + SO0510 0.56 +2.4 535,708 - SO0510 0.57 +1.4 535,708 - SO0510 0.57 -2.5 535,710 + SO0510 0.57 +1.0 535,741 - SO0510 0.62 +0.5 535,752 - SO0510 0.64 -0.1 535,759 + SO0510 0.65 -2.1 535,875 - SO0510 0.82 +0.0 535,880 - SO0510 0.82 -0.8 535,883 + SO0510 0.83 +1.0 535,913 + SO0510 0.87 +1.5 535,918 + SO0510 0.88 +0.4 535,923 + SO0510 0.89 -0.1 535,926 - SO0510 0.89 +0.4 535,926 - SO0510 0.89 +0.3 535,928 + SO0510 0.90 +0.2 535,936 - -0.8 535,939 + +0.9 535,963 + +0.3 535,963 + -0.8 535,971 - -0.2 535,971 - -0.0 536,044 + -0.9 536,057 - +1.0 536,170 - accB SO0511 0.33 -1.6 536,235 + accB SO0511 0.47 -0.1 536,243 - accB SO0511 0.49 +1.6 536,245 + accB SO0511 0.50 -0.9 536,307 + accB SO0511 0.63 +0.8 536,307 + accB SO0511 0.63 -0.1 536,309 + accB SO0511 0.64 -1.0 536,309 + accB SO0511 0.64 -0.3 536,309 + accB SO0511 0.64 +1.4 536,317 - accB SO0511 0.65 -0.6 536,319 + accB SO0511 0.66 -0.6 536,319 + accB SO0511 0.66 -1.1 536,319 + accB SO0511 0.66 +0.7 536,319 + accB SO0511 0.66 -0.3 536,327 - accB SO0511 0.68 +0.5 536,327 - accB SO0511 0.68 +0.4 536,346 - accB SO0511 0.72 -0.2 536,409 + accB SO0511 0.85 -0.1 536,463 + +0.6 536,485 - -1.5 536,624 + aroQ SO0512 0.25 -1.1 536,639 + aroQ SO0512 0.29 -0.9 536,639 + aroQ SO0512 0.29 -1.3 536,647 - aroQ SO0512 0.30 -0.1 536,699 + aroQ SO0512 0.42 -1.1 536,704 + aroQ SO0512 0.43 -1.6 536,704 + aroQ SO0512 0.43 -1.9 536,707 - aroQ SO0512 0.44 -0.1 536,707 - aroQ SO0512 0.44 -2.9 536,712 - aroQ SO0512 0.45 -0.3 536,712 - aroQ SO0512 0.45 +0.9 536,712 - aroQ SO0512 0.45 +0.6 536,712 - aroQ SO0512 0.45 -1.6 536,720 + aroQ SO0512 0.47 -1.3 536,728 - aroQ SO0512 0.49 -1.6 536,772 + aroQ SO0512 0.59 -3.2 536,772 + aroQ SO0512 0.59 -1.6 536,775 - aroQ SO0512 0.59 +0.9 536,782 + aroQ SO0512 0.61 +0.1 536,828 + aroQ SO0512 0.71 -2.8 536,837 - aroQ SO0512 0.73 +0.3 536,870 + aroQ SO0512 0.81 -1.6 536,870 + aroQ SO0512 0.81 +0.7 536,870 + aroQ SO0512 0.81 -0.7 536,870 + aroQ SO0512 0.81 +0.9 536,878 - aroQ SO0512 0.83 -1.6 536,964 + -1.3 536,998 + -1.6 537,006 - -0.8 537,006 - +1.7 537,041 + -1.4 537,053 + +0.7 537,244 - SO0513 0.46 +1.2 537,324 - SO0513 0.65 +0.2 537,373 - SO0513 0.77 -1.0 537,468 + +0.5 537,515 - -0.7 537,554 + -2.0 537,554 + +2.1 537,562 + +2.8 537,562 - -0.4 537,602 + +1.4 537,602 + +1.1 537,603 + +0.3 537,603 + -0.4 537,610 - SO0514 0.11 +0.7 537,611 - SO0514 0.11 -0.4 537,611 - SO0514 0.11 -0.9 537,678 - SO0514 0.27 +0.9 537,849 + SO0514 0.69 +0.5 537,862 + SO0514 0.73 +0.5
Or see this region's nucleotide sequence