Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0479 and SO0480 are separated by 98 nucleotides SO0480 and SO0481 are separated by 93 nucleotides SO0481 and nrfG are separated by 93 nucleotides nrfG and nrfC are separated by 86 nucleotides
SO0479: SO0479 - cytochrome c, putative (NCBI ptt file), at 502,638 to 504,767
SO0479
SO0480: SO0480 - conserved domain protein (NCBI ptt file), at 504,866 to 505,306
SO0480
SO0481: SO0481 - peptidyl-prolyl cis-trans isomerase, FKBP-type (NCBI ptt file), at 505,400 to 506,179
SO0481
SO0482: nrfG - formate-dependent nitrite reductase, nrfG protein (NCBI ptt file), at 506,273 to 506,947
nrfG
SO0483: nrfC - formate-dependent nitrite reductase, nrfC protein (NCBI ptt file), at 507,034 to 507,741
nrfC
Position (kb) 505
506
507 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 504.422 kb on + strand, within SO0479 at 504.430 kb on - strand, within SO0479 at 504.430 kb on - strand, within SO0479 at 504.483 kb on + strand, within SO0479 at 504.483 kb on + strand, within SO0479 at 504.491 kb on - strand, within SO0479 at 504.535 kb on + strand, within SO0479 at 504.542 kb on - strand, within SO0479 at 504.543 kb on - strand, within SO0479 at 504.626 kb on - strand at 504.660 kb on - strand at 504.705 kb on - strand at 504.715 kb on - strand at 504.723 kb on + strand at 504.723 kb on + strand at 504.731 kb on - strand at 504.772 kb on + strand at 504.780 kb on - strand at 504.791 kb on + strand at 504.927 kb on + strand, within SO0480 at 504.927 kb on - strand, within SO0480 at 504.963 kb on + strand, within SO0480 at 505.034 kb on + strand, within SO0480 at 505.094 kb on - strand, within SO0480 at 505.130 kb on + strand, within SO0480 at 505.144 kb on - strand, within SO0480 at 505.378 kb on - strand at 505.389 kb on - strand at 505.445 kb on + strand at 505.506 kb on - strand, within SO0481 at 505.520 kb on + strand, within SO0481 at 505.576 kb on - strand, within SO0481 at 505.616 kb on + strand, within SO0481 at 505.616 kb on + strand, within SO0481 at 505.812 kb on + strand, within SO0481 at 505.812 kb on + strand, within SO0481 at 505.812 kb on + strand, within SO0481 at 505.851 kb on - strand, within SO0481 at 505.858 kb on + strand, within SO0481 at 505.858 kb on + strand, within SO0481 at 505.866 kb on - strand, within SO0481 at 505.889 kb on - strand, within SO0481 at 505.992 kb on + strand, within SO0481 at 505.992 kb on + strand, within SO0481 at 506.013 kb on + strand, within SO0481 at 506.193 kb on - strand at 506.198 kb on + strand at 506.205 kb on - strand at 506.222 kb on + strand at 506.243 kb on + strand at 506.273 kb on - strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.288 kb on - strand at 506.410 kb on - strand, within nrfG at 506.410 kb on - strand, within nrfG at 506.412 kb on + strand, within nrfG at 506.412 kb on - strand, within nrfG at 506.414 kb on + strand, within nrfG at 506.414 kb on + strand, within nrfG at 506.415 kb on - strand, within nrfG at 506.420 kb on - strand, within nrfG at 506.531 kb on + strand, within nrfG at 506.590 kb on + strand, within nrfG at 506.590 kb on + strand, within nrfG at 506.598 kb on - strand, within nrfG at 506.603 kb on + strand, within nrfG at 506.682 kb on - strand, within nrfG at 506.686 kb on + strand, within nrfG at 506.686 kb on + strand, within nrfG at 506.686 kb on + strand, within nrfG at 506.694 kb on - strand, within nrfG at 506.706 kb on - strand, within nrfG at 506.706 kb on - strand, within nrfG at 506.706 kb on - strand, within nrfG at 506.733 kb on + strand, within nrfG at 506.733 kb on + strand, within nrfG at 506.741 kb on - strand, within nrfG at 506.741 kb on - strand, within nrfG at 506.741 kb on - strand, within nrfG at 506.741 kb on - strand, within nrfG at 506.741 kb on - strand, within nrfG at 506.805 kb on + strand, within nrfG at 506.861 kb on + strand, within nrfG at 506.869 kb on - strand, within nrfG at 506.869 kb on - strand, within nrfG at 507.021 kb on + strand at 507.060 kb on - strand at 507.063 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 504,422 + SO0479 0.84 -0.3 504,430 - SO0479 0.84 -0.5 504,430 - SO0479 0.84 -0.1 504,483 + SO0479 0.87 +0.3 504,483 + SO0479 0.87 -2.9 504,491 - SO0479 0.87 -1.0 504,535 + SO0479 0.89 -1.2 504,542 - SO0479 0.89 -0.1 504,543 - SO0479 0.89 -0.2 504,626 - +0.4 504,660 - +2.1 504,705 - +0.5 504,715 - -2.2 504,723 + +0.1 504,723 + -1.1 504,731 - +0.6 504,772 + -1.2 504,780 - +1.0 504,791 + -0.1 504,927 + SO0480 0.14 -0.8 504,927 - SO0480 0.14 -0.3 504,963 + SO0480 0.22 -1.5 505,034 + SO0480 0.38 +1.6 505,094 - SO0480 0.52 +0.1 505,130 + SO0480 0.60 -0.4 505,144 - SO0480 0.63 +0.7 505,378 - +0.1 505,389 - -0.5 505,445 + -2.0 505,506 - SO0481 0.14 +2.7 505,520 + SO0481 0.15 +1.7 505,576 - SO0481 0.23 +0.4 505,616 + SO0481 0.28 -0.4 505,616 + SO0481 0.28 -0.2 505,812 + SO0481 0.53 +2.9 505,812 + SO0481 0.53 -0.1 505,812 + SO0481 0.53 +1.3 505,851 - SO0481 0.58 -1.7 505,858 + SO0481 0.59 +1.4 505,858 + SO0481 0.59 +0.3 505,866 - SO0481 0.60 +0.5 505,889 - SO0481 0.63 -1.1 505,992 + SO0481 0.76 -0.3 505,992 + SO0481 0.76 +1.7 506,013 + SO0481 0.79 +0.6 506,193 - -1.4 506,198 + -1.6 506,205 - +0.6 506,222 + -0.4 506,243 + -0.3 506,273 - -0.3 506,280 + -0.7 506,280 + -1.6 506,280 + -2.6 506,280 + +0.9 506,288 - -0.0 506,410 - nrfG SO0482 0.20 -1.4 506,410 - nrfG SO0482 0.20 +0.7 506,412 + nrfG SO0482 0.21 -1.8 506,412 - nrfG SO0482 0.21 +0.9 506,414 + nrfG SO0482 0.21 +0.4 506,414 + nrfG SO0482 0.21 -1.0 506,415 - nrfG SO0482 0.21 -0.8 506,420 - nrfG SO0482 0.22 +1.1 506,531 + nrfG SO0482 0.38 +0.0 506,590 + nrfG SO0482 0.47 +1.3 506,590 + nrfG SO0482 0.47 +0.6 506,598 - nrfG SO0482 0.48 -3.0 506,603 + nrfG SO0482 0.49 -1.3 506,682 - nrfG SO0482 0.61 -0.1 506,686 + nrfG SO0482 0.61 +0.8 506,686 + nrfG SO0482 0.61 -1.5 506,686 + nrfG SO0482 0.61 -0.1 506,694 - nrfG SO0482 0.62 +0.2 506,706 - nrfG SO0482 0.64 -1.5 506,706 - nrfG SO0482 0.64 -0.7 506,706 - nrfG SO0482 0.64 -0.6 506,733 + nrfG SO0482 0.68 +1.0 506,733 + nrfG SO0482 0.68 +2.4 506,741 - nrfG SO0482 0.69 -3.8 506,741 - nrfG SO0482 0.69 -0.8 506,741 - nrfG SO0482 0.69 -0.4 506,741 - nrfG SO0482 0.69 +0.4 506,741 - nrfG SO0482 0.69 -0.3 506,805 + nrfG SO0482 0.79 +1.2 506,861 + nrfG SO0482 0.87 +0.6 506,869 - nrfG SO0482 0.88 -0.1 506,869 - nrfG SO0482 0.88 -0.1 507,021 + +1.5 507,060 - -0.4 507,063 + -0.1
Or see this region's nucleotide sequence