Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0334 and SO0335 overlap by 4 nucleotides SO0335 and SO0336 are separated by 179 nucleotides SO0336 and SO0337 are separated by 56 nucleotides SO0337 and SO0338 are separated by 187 nucleotides SO0338 and SO0339 are separated by 17 nucleotides
SO0334: SO0334 - conserved hypothetical protein (NCBI ptt file), at 336,742 to 336,954
SO0334
SO0335: SO0335 - conserved hypothetical protein (NCBI ptt file), at 336,951 to 337,172
SO0335
SO0336: SO0336 - hypothetical Na+/H+ antiporter (NCBI ptt file), at 337,352 to 338,875
SO0336
SO0337: SO0337 - hypothetical translation initiation inhibitor, yjgF family (NCBI ptt file), at 338,932 to 339,288
SO0337
SO0338: SO0338 - hypothetical protein (NCBI ptt file), at 339,476 to 339,811
SO0338
SO0339: SO0339 - hypothetical transcriptional antiterminator (NCBI ptt file), at 339,829 to 340,101
SO0339
Position (kb) 337
338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 336.483 kb on + strand at 336.488 kb on + strand at 336.496 kb on - strand at 336.509 kb on - strand at 336.516 kb on - strand at 336.516 kb on - strand at 336.716 kb on - strand at 336.772 kb on - strand, within SO0334 at 336.772 kb on - strand, within SO0334 at 336.772 kb on - strand, within SO0334 at 336.813 kb on - strand, within SO0334 at 336.894 kb on + strand, within SO0334 at 336.907 kb on - strand, within SO0334 at 336.939 kb on + strand at 336.939 kb on + strand at 336.980 kb on - strand, within SO0335 at 337.068 kb on - strand, within SO0335 at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.240 kb on - strand at 337.354 kb on - strand at 337.397 kb on + strand at 337.512 kb on - strand, within SO0336 at 337.610 kb on + strand, within SO0336 at 337.739 kb on + strand, within SO0336 at 337.769 kb on - strand, within SO0336 at 337.780 kb on - strand, within SO0336 at 337.793 kb on + strand, within SO0336 at 337.836 kb on - strand, within SO0336 at 337.837 kb on + strand, within SO0336 at 337.862 kb on - strand, within SO0336 at 337.862 kb on - strand, within SO0336 at 337.989 kb on + strand, within SO0336 at 337.997 kb on - strand, within SO0336 at 338.001 kb on + strand, within SO0336 at 338.032 kb on - strand, within SO0336 at 338.082 kb on - strand, within SO0336 at 338.092 kb on + strand, within SO0336 at 338.128 kb on + strand, within SO0336 at 338.138 kb on - strand, within SO0336 at 338.142 kb on + strand, within SO0336 at 338.147 kb on + strand, within SO0336 at 338.155 kb on - strand, within SO0336 at 338.359 kb on - strand, within SO0336 at 338.369 kb on - strand, within SO0336 at 338.462 kb on + strand, within SO0336 at 338.488 kb on - strand, within SO0336 at 338.567 kb on + strand, within SO0336 at 338.617 kb on - strand, within SO0336 at 338.643 kb on + strand, within SO0336 at 338.663 kb on + strand, within SO0336 at 338.706 kb on + strand, within SO0336 at 338.707 kb on - strand, within SO0336 at 338.707 kb on - strand, within SO0336 at 338.709 kb on - strand, within SO0336 at 338.805 kb on + strand at 338.813 kb on - strand at 338.833 kb on + strand at 338.833 kb on + strand at 338.833 kb on + strand at 338.833 kb on + strand at 338.833 kb on + strand at 338.908 kb on - strand at 338.962 kb on + strand at 338.970 kb on - strand, within SO0337 at 338.970 kb on - strand, within SO0337 at 338.970 kb on - strand, within SO0337 at 338.970 kb on - strand, within SO0337 at 338.970 kb on - strand, within SO0337 at 339.010 kb on - strand, within SO0337 at 339.038 kb on + strand, within SO0337 at 339.069 kb on + strand, within SO0337 at 339.111 kb on + strand, within SO0337 at 339.119 kb on - strand, within SO0337 at 339.127 kb on - strand, within SO0337 at 339.237 kb on + strand, within SO0337 at 339.395 kb on - strand at 339.395 kb on - strand at 339.395 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.427 kb on + strand at 339.525 kb on + strand, within SO0338 at 339.656 kb on + strand, within SO0338 at 339.679 kb on - strand, within SO0338 at 339.689 kb on + strand, within SO0338 at 339.691 kb on - strand, within SO0338 at 339.702 kb on - strand, within SO0338 at 339.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 336,483 + +0.0 336,488 + +1.2 336,496 - +0.8 336,509 - -0.8 336,516 - -1.0 336,516 - +0.2 336,716 - +0.6 336,772 - SO0334 0.14 -0.7 336,772 - SO0334 0.14 -0.8 336,772 - SO0334 0.14 +0.2 336,813 - SO0334 0.33 +1.0 336,894 + SO0334 0.71 +0.5 336,907 - SO0334 0.77 -1.7 336,939 + -0.8 336,939 + -1.3 336,980 - SO0335 0.13 -0.6 337,068 - SO0335 0.53 -0.9 337,170 + -1.1 337,170 + +0.2 337,170 + -1.6 337,170 + +1.8 337,170 + +0.8 337,170 + -1.2 337,170 + +0.3 337,170 + +1.0 337,178 - +0.3 337,178 - -2.2 337,178 - -0.7 337,178 - +1.6 337,178 - +0.5 337,180 + +0.0 337,180 + -0.1 337,180 + +1.6 337,180 + +0.6 337,180 + +1.5 337,180 + -1.5 337,188 - +0.0 337,188 - -0.6 337,188 - -0.5 337,188 - +0.5 337,188 - -0.4 337,188 - -3.1 337,188 - +0.3 337,188 - -1.0 337,240 - -1.4 337,354 - +0.1 337,397 + -1.3 337,512 - SO0336 0.10 -0.3 337,610 + SO0336 0.17 -0.5 337,739 + SO0336 0.25 -0.8 337,769 - SO0336 0.27 +0.0 337,780 - SO0336 0.28 -0.1 337,793 + SO0336 0.29 -0.1 337,836 - SO0336 0.32 -0.6 337,837 + SO0336 0.32 -1.3 337,862 - SO0336 0.33 +1.9 337,862 - SO0336 0.33 -2.6 337,989 + SO0336 0.42 -0.3 337,997 - SO0336 0.42 +0.4 338,001 + SO0336 0.43 -1.3 338,032 - SO0336 0.45 +1.0 338,082 - SO0336 0.48 -1.1 338,092 + SO0336 0.49 +0.5 338,128 + SO0336 0.51 -4.2 338,138 - SO0336 0.52 +0.2 338,142 + SO0336 0.52 +0.5 338,147 + SO0336 0.52 -0.7 338,155 - SO0336 0.53 +0.9 338,359 - SO0336 0.66 -1.4 338,369 - SO0336 0.67 +1.2 338,462 + SO0336 0.73 -0.8 338,488 - SO0336 0.75 -0.6 338,567 + SO0336 0.80 +0.2 338,617 - SO0336 0.83 +0.1 338,643 + SO0336 0.85 -0.9 338,663 + SO0336 0.86 +1.4 338,706 + SO0336 0.89 +0.4 338,707 - SO0336 0.89 -0.8 338,707 - SO0336 0.89 -0.7 338,709 - SO0336 0.89 +0.4 338,805 + -0.5 338,813 - -0.0 338,833 + -0.3 338,833 + -0.4 338,833 + -2.1 338,833 + +1.0 338,833 + +0.6 338,908 - +0.3 338,962 + -1.6 338,970 - SO0337 0.11 -0.3 338,970 - SO0337 0.11 -0.6 338,970 - SO0337 0.11 -0.6 338,970 - SO0337 0.11 -1.0 338,970 - SO0337 0.11 -1.0 339,010 - SO0337 0.22 +1.5 339,038 + SO0337 0.30 +0.6 339,069 + SO0337 0.38 -0.5 339,111 + SO0337 0.50 +0.6 339,119 - SO0337 0.52 +0.1 339,127 - SO0337 0.55 +0.9 339,237 + SO0337 0.85 -0.3 339,395 - +0.6 339,395 - -0.5 339,395 - +1.5 339,401 - +0.6 339,401 - -2.1 339,401 - -0.5 339,401 - -0.2 339,427 + -1.7 339,525 + SO0338 0.15 -0.1 339,656 + SO0338 0.54 +1.1 339,679 - SO0338 0.60 -0.1 339,689 + SO0338 0.63 +0.1 339,691 - SO0338 0.64 +2.4 339,702 - SO0338 0.67 -1.2 339,779 - +1.4
Or see this region's nucleotide sequence