Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmC and ccmB are separated by 1 nucleotides ccmB and ccmA are separated by 11 nucleotides ccmA and scyA are separated by 325 nucleotides scyA and SO0265 are separated by 80 nucleotides
SO0261: ccmC - heme exporter protein CcmC (NCBI ptt file), at 261,223 to 261,969
ccmC
SO0262: ccmB - heme exporter protein CcmB (NCBI ptt file), at 261,971 to 262,657
ccmB
SO0263: ccmA - heme exporter protein CcmA (NCBI ptt file), at 262,669 to 263,319
ccmA
SO0264: scyA - cytochrome c (NCBI ptt file), at 263,645 to 263,944
scyA
SO0265: SO0265 - conserved hypothetical protein (NCBI ptt file), at 264,025 to 265,272
SO0265
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.801 kb on - strand, within ccmC at 261.952 kb on - strand at 262.012 kb on + strand at 262.226 kb on + strand, within ccmB at 262.372 kb on + strand, within ccmB at 262.377 kb on + strand, within ccmB at 262.401 kb on - strand, within ccmB at 262.641 kb on - strand at 262.666 kb on + strand at 262.668 kb on - strand at 262.876 kb on - strand, within ccmA at 262.899 kb on - strand, within ccmA at 263.041 kb on - strand, within ccmA at 263.120 kb on - strand, within ccmA at 263.120 kb on - strand, within ccmA at 263.267 kb on + strand at 263.290 kb on - strand at 263.382 kb on + strand at 263.397 kb on + strand at 263.406 kb on - strand at 263.406 kb on - strand at 263.406 kb on - strand at 263.430 kb on - strand at 263.431 kb on - strand at 263.499 kb on + strand at 263.509 kb on + strand at 263.582 kb on + strand at 263.587 kb on - strand at 263.593 kb on + strand at 263.613 kb on - strand at 263.636 kb on + strand at 263.659 kb on + strand at 263.734 kb on + strand, within scyA at 263.739 kb on + strand, within scyA at 263.752 kb on + strand, within scyA at 263.785 kb on + strand, within scyA at 263.937 kb on - strand at 264.094 kb on + strand at 264.147 kb on + strand at 264.147 kb on + strand at 264.197 kb on - strand, within SO0265 at 264.221 kb on + strand, within SO0265 at 264.246 kb on - strand, within SO0265 at 264.246 kb on - strand, within SO0265
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 261,801 - ccmC SO0261 0.77 -0.9 261,952 - +0.3 262,012 + -0.5 262,226 + ccmB SO0262 0.37 +0.3 262,372 + ccmB SO0262 0.58 -1.3 262,377 + ccmB SO0262 0.59 -1.1 262,401 - ccmB SO0262 0.63 -1.6 262,641 - -1.5 262,666 + -0.7 262,668 - -1.5 262,876 - ccmA SO0263 0.32 +0.9 262,899 - ccmA SO0263 0.35 -1.6 263,041 - ccmA SO0263 0.57 -0.5 263,120 - ccmA SO0263 0.69 +0.3 263,120 - ccmA SO0263 0.69 -1.9 263,267 + -0.7 263,290 - +0.9 263,382 + -0.9 263,397 + +0.5 263,406 - +0.0 263,406 - -1.0 263,406 - -1.5 263,430 - +0.7 263,431 - -1.9 263,499 + -1.1 263,509 + +0.5 263,582 + +1.7 263,587 - +0.8 263,593 + +0.3 263,613 - +1.3 263,636 + -0.3 263,659 + -0.0 263,734 + scyA SO0264 0.30 -1.2 263,739 + scyA SO0264 0.31 +0.7 263,752 + scyA SO0264 0.36 +1.2 263,785 + scyA SO0264 0.47 +2.5 263,937 - +1.2 264,094 + -0.3 264,147 + -1.5 264,147 + -0.9 264,197 - SO0265 0.14 -0.7 264,221 + SO0265 0.16 +0.5 264,246 - SO0265 0.18 -2.0 264,246 - SO0265 0.18 -1.8
Or see this region's nucleotide sequence