Strain Fitness in Shewanella oneidensis MR-1 around SO0185

Experiment: fumarate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0183 and SO0184 are separated by 85 nucleotidesSO0184 and SO0185 are separated by 39 nucleotidesSO0185 and SO0186 are separated by 28 nucleotidesSO0186 and SO0187 are separated by 55 nucleotides SO0183: SO0183 - acetyltransferase, GNAT family (NCBI ptt file), at 187,837 to 188,319 SO0183 SO0184: SO0184 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,405 to 188,956 SO0184 SO0185: SO0185 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,996 to 189,526 SO0185 SO0186: SO0186 - hypothetical microcystin dependent protein (NCBI ptt file), at 189,555 to 190,100 SO0186 SO0187: SO0187 - serine protease, subtilase family (NCBI ptt file), at 190,156 to 191,379 SO0187 Position (kb) 188 189 190Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 188.027 kb on + strand, within SO0183at 188.038 kb on + strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.046 kb on - strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.129 kb on + strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.137 kb on - strand, within SO0183at 188.138 kb on + strand, within SO0183at 188.139 kb on - strand, within SO0183at 188.139 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.142 kb on - strand, within SO0183at 188.144 kb on - strand, within SO0183at 188.147 kb on - strand, within SO0183at 188.151 kb on + strand, within SO0183at 188.157 kb on - strand, within SO0183at 188.160 kb on - strand, within SO0183at 188.203 kb on + strand, within SO0183at 188.234 kb on + strand, within SO0183at 188.242 kb on - strand, within SO0183at 188.243 kb on + strand, within SO0183at 188.265 kb on + strand, within SO0183at 188.290 kb on + strandat 188.315 kb on + strandat 188.323 kb on - strandat 188.323 kb on - strandat 188.323 kb on - strandat 188.329 kb on - strandat 188.331 kb on + strandat 188.388 kb on + strandat 188.388 kb on + strandat 188.388 kb on + strandat 188.396 kb on - strandat 188.442 kb on - strandat 188.442 kb on - strandat 188.453 kb on + strandat 188.453 kb on + strandat 188.453 kb on + strandat 188.459 kb on + strandat 188.461 kb on - strand, within SO0184at 188.478 kb on - strand, within SO0184at 188.525 kb on + strand, within SO0184at 188.528 kb on + strand, within SO0184at 188.533 kb on + strand, within SO0184at 188.541 kb on - strand, within SO0184at 188.564 kb on - strand, within SO0184at 188.701 kb on + strand, within SO0184at 188.701 kb on - strand, within SO0184at 188.737 kb on + strand, within SO0184at 188.744 kb on - strand, within SO0184at 188.744 kb on - strand, within SO0184at 188.745 kb on - strand, within SO0184at 188.746 kb on - strand, within SO0184at 188.766 kb on + strand, within SO0184at 188.771 kb on + strand, within SO0184at 188.779 kb on - strand, within SO0184at 188.813 kb on - strand, within SO0184at 188.815 kb on + strand, within SO0184at 188.815 kb on + strand, within SO0184at 188.823 kb on - strand, within SO0184at 188.823 kb on - strand, within SO0184at 188.828 kb on + strand, within SO0184at 188.933 kb on + strandat 188.933 kb on + strandat 188.934 kb on + strandat 188.979 kb on + strandat 189.047 kb on + strandat 189.055 kb on - strand, within SO0185at 189.064 kb on + strand, within SO0185at 189.148 kb on - strand, within SO0185at 189.150 kb on + strand, within SO0185at 189.194 kb on + strand, within SO0185at 189.196 kb on - strand, within SO0185at 189.197 kb on - strand, within SO0185at 189.206 kb on + strand, within SO0185at 189.209 kb on - strand, within SO0185at 189.350 kb on + strand, within SO0185at 189.378 kb on - strand, within SO0185at 189.378 kb on - strand, within SO0185at 189.390 kb on + strand, within SO0185at 189.390 kb on + strand, within SO0185at 189.390 kb on + strand, within SO0185at 189.398 kb on - strand, within SO0185at 189.398 kb on - strand, within SO0185at 189.398 kb on - strand, within SO0185at 189.398 kb on - strand, within SO0185at 189.446 kb on - strand, within SO0185at 189.536 kb on + strandat 189.559 kb on - strandat 189.606 kb on + strandat 189.606 kb on - strandat 189.707 kb on - strand, within SO0186at 189.709 kb on + strand, within SO0186at 189.709 kb on + strand, within SO0186at 189.743 kb on + strand, within SO0186at 189.760 kb on + strand, within SO0186at 189.774 kb on - strand, within SO0186at 189.791 kb on + strand, within SO0186at 189.791 kb on + strand, within SO0186at 189.791 kb on + strand, within SO0186at 189.791 kb on + strand, within SO0186at 189.791 kb on + strand, within SO0186at 189.791 kb on + strand, within SO0186at 189.799 kb on - strand, within SO0186at 189.799 kb on - strand, within SO0186at 189.799 kb on - strand, within SO0186at 189.799 kb on - strand, within SO0186at 189.844 kb on + strand, within SO0186at 189.846 kb on + strand, within SO0186at 189.852 kb on - strand, within SO0186at 189.852 kb on - strand, within SO0186at 189.852 kb on - strand, within SO0186at 189.929 kb on - strand, within SO0186at 190.043 kb on - strand, within SO0186at 190.076 kb on - strandat 190.077 kb on + strandat 190.087 kb on - strandat 190.133 kb on + strandat 190.158 kb on + strandat 190.277 kb on + strandat 190.346 kb on - strand, within SO0187at 190.447 kb on + strand, within SO0187at 190.455 kb on - strand, within SO0187

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor
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188,027 + SO0183 0.39 +0.7
188,038 + SO0183 0.42 +0.7
188,046 - SO0183 0.43 +0.5
188,046 - SO0183 0.43 +0.5
188,046 - SO0183 0.43 -2.7
188,129 + SO0183 0.60 +1.0
188,129 + SO0183 0.60 +2.2
188,129 + SO0183 0.60 -0.2
188,129 + SO0183 0.60 +1.0
188,129 + SO0183 0.60 -2.1
188,129 + SO0183 0.60 -0.1
188,129 + SO0183 0.60 -2.7
188,129 + SO0183 0.60 -0.1
188,129 + SO0183 0.60 +0.2
188,129 + SO0183 0.60 +0.3
188,129 + SO0183 0.60 +0.7
188,129 + SO0183 0.60 +0.6
188,129 + SO0183 0.60 -0.6
188,129 + SO0183 0.60 -0.4
188,129 + SO0183 0.60 +0.5
188,129 + SO0183 0.60 +1.0
188,129 + SO0183 0.60 +0.1
188,129 + SO0183 0.60 -2.1
188,129 + SO0183 0.60 +0.7
188,137 - SO0183 0.62 -1.7
188,137 - SO0183 0.62 -1.7
188,137 - SO0183 0.62 -0.3
188,137 - SO0183 0.62 +1.3
188,137 - SO0183 0.62 +0.3
188,137 - SO0183 0.62 +0.3
188,137 - SO0183 0.62 -0.1
188,137 - SO0183 0.62 -1.4
188,137 - SO0183 0.62 +0.4
188,137 - SO0183 0.62 -0.5
188,138 + SO0183 0.62 -2.5
188,139 - SO0183 0.63 +1.1
188,139 - SO0183 0.63 -2.6
188,142 - SO0183 0.63 +1.0
188,142 - SO0183 0.63 +1.9
188,142 - SO0183 0.63 -0.7
188,144 - SO0183 0.64 +0.0
188,147 - SO0183 0.64 -0.3
188,151 + SO0183 0.65 +0.4
188,157 - SO0183 0.66 -0.1
188,160 - SO0183 0.67 +0.6
188,203 + SO0183 0.76 -0.8
188,234 + SO0183 0.82 -0.1
188,242 - SO0183 0.84 -0.7
188,243 + SO0183 0.84 -0.3
188,265 + SO0183 0.89 +0.5
188,290 + -0.3
188,315 + +0.1
188,323 - +0.5
188,323 - -0.3
188,323 - -1.1
188,329 - -0.5
188,331 + -0.6
188,388 + +0.9
188,388 + +0.2
188,388 + +1.5
188,396 - +0.3
188,442 - +2.3
188,442 - -1.1
188,453 + -2.5
188,453 + +0.1
188,453 + -0.1
188,459 + +0.7
188,461 - SO0184 0.10 -1.1
188,478 - SO0184 0.13 +1.6
188,525 + SO0184 0.22 -0.9
188,528 + SO0184 0.22 -1.8
188,533 + SO0184 0.23 +1.1
188,541 - SO0184 0.25 -0.9
188,564 - SO0184 0.29 -0.1
188,701 + SO0184 0.54 -0.1
188,701 - SO0184 0.54 -0.2
188,737 + SO0184 0.60 +0.2
188,744 - SO0184 0.61 -0.8
188,744 - SO0184 0.61 -1.4
188,745 - SO0184 0.62 +0.1
188,746 - SO0184 0.62 +2.0
188,766 + SO0184 0.65 +0.1
188,771 + SO0184 0.66 -1.4
188,779 - SO0184 0.68 -0.8
188,813 - SO0184 0.74 -4.1
188,815 + SO0184 0.74 -0.0
188,815 + SO0184 0.74 +1.4
188,823 - SO0184 0.76 +0.8
188,823 - SO0184 0.76 +0.9
188,828 + SO0184 0.77 -0.2
188,933 + -1.6
188,933 + +1.4
188,934 + +0.4
188,979 + -0.3
189,047 + +1.1
189,055 - SO0185 0.11 +0.5
189,064 + SO0185 0.13 +0.9
189,148 - SO0185 0.29 +1.8
189,150 + SO0185 0.29 -0.5
189,194 + SO0185 0.37 +2.0
189,196 - SO0185 0.38 +0.4
189,197 - SO0185 0.38 -0.4
189,206 + SO0185 0.40 +0.7
189,209 - SO0185 0.40 +0.5
189,350 + SO0185 0.67 -0.1
189,378 - SO0185 0.72 +0.8
189,378 - SO0185 0.72 -0.7
189,390 + SO0185 0.74 +1.7
189,390 + SO0185 0.74 +1.0
189,390 + SO0185 0.74 -1.5
189,398 - SO0185 0.76 +1.1
189,398 - SO0185 0.76 -0.5
189,398 - SO0185 0.76 -0.8
189,398 - SO0185 0.76 +1.9
189,446 - SO0185 0.85 +1.8
189,536 + +1.0
189,559 - -0.9
189,606 + +1.1
189,606 - -1.1
189,707 - SO0186 0.28 +0.7
189,709 + SO0186 0.28 -0.1
189,709 + SO0186 0.28 +0.4
189,743 + SO0186 0.34 +1.2
189,760 + SO0186 0.38 +0.9
189,774 - SO0186 0.40 -1.0
189,791 + SO0186 0.43 +0.8
189,791 + SO0186 0.43 -0.4
189,791 + SO0186 0.43 +1.1
189,791 + SO0186 0.43 -2.6
189,791 + SO0186 0.43 -0.0
189,791 + SO0186 0.43 -2.0
189,799 - SO0186 0.45 +0.2
189,799 - SO0186 0.45 -1.3
189,799 - SO0186 0.45 -0.7
189,799 - SO0186 0.45 +0.1
189,844 + SO0186 0.53 -2.4
189,846 + SO0186 0.53 +1.7
189,852 - SO0186 0.54 +1.9
189,852 - SO0186 0.54 +0.1
189,852 - SO0186 0.54 +1.1
189,929 - SO0186 0.68 -1.1
190,043 - SO0186 0.89 +1.2
190,076 - +0.5
190,077 + -0.9
190,087 - +0.1
190,133 + -0.3
190,158 + -0.1
190,277 + -0.7
190,346 - SO0187 0.16 +1.5
190,447 + SO0187 0.24 +0.1
190,455 - SO0187 0.24 -0.7

Or see this region's nucleotide sequence