Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09605

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09600 and BWI76_RS09605 are separated by 68 nucleotidesBWI76_RS09605 and BWI76_RS09610 are separated by 324 nucleotidesBWI76_RS09610 and BWI76_RS09615 are separated by 30 nucleotides BWI76_RS09600: BWI76_RS09600 - macrolide ABC transporter permease/ATP-binding protein MacB, at 2,008,593 to 2,010,539 _RS09600 BWI76_RS09605: BWI76_RS09605 - cold-shock protein, at 2,010,608 to 2,010,838 _RS09605 BWI76_RS09610: BWI76_RS09610 - ATP-dependent Clp protease adaptor ClpS, at 2,011,163 to 2,011,480 _RS09610 BWI76_RS09615: BWI76_RS09615 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,011,511 to 2,013,793 _RS09615 Position (kb) 2010 2011Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2009.839 kb on + strand, within BWI76_RS09600at 2009.990 kb on + strand, within BWI76_RS09600at 2010.135 kb on + strand, within BWI76_RS09600at 2010.151 kb on + strand, within BWI76_RS09600at 2010.314 kb on - strand, within BWI76_RS09600at 2010.584 kb on + strandat 2010.592 kb on - strandat 2010.832 kb on + strandat 2011.146 kb on - strandat 2011.165 kb on + strandat 2011.267 kb on - strand, within BWI76_RS09610at 2011.337 kb on - strand, within BWI76_RS09610at 2011.456 kb on + strandat 2011.579 kb on + strandat 2011.612 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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2,009,839 + BWI76_RS09600 0.64 -0.2
2,009,990 + BWI76_RS09600 0.72 -1.2
2,010,135 + BWI76_RS09600 0.79 -0.8
2,010,151 + BWI76_RS09600 0.80 +0.3
2,010,314 - BWI76_RS09600 0.88 +0.3
2,010,584 + -1.3
2,010,592 - +1.2
2,010,832 + +0.7
2,011,146 - +1.0
2,011,165 + +1.3
2,011,267 - BWI76_RS09610 0.33 -1.5
2,011,337 - BWI76_RS09610 0.55 -3.6
2,011,456 + -1.0
2,011,579 + -0.2
2,011,612 + -4.2

Or see this region's nucleotide sequence