Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04905

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04895 and BWI76_RS04900 are separated by 50 nucleotidesBWI76_RS04900 and BWI76_RS04905 are separated by 10 nucleotidesBWI76_RS04905 and BWI76_RS04910 are separated by 334 nucleotides BWI76_RS04895: BWI76_RS04895 - hypothetical protein, at 1,026,368 to 1,026,652 _RS04895 BWI76_RS04900: BWI76_RS04900 - DUF2950 domain-containing protein, at 1,026,703 to 1,027,497 _RS04900 BWI76_RS04905: BWI76_RS04905 - DUF3300 domain-containing protein, at 1,027,508 to 1,029,094 _RS04905 BWI76_RS04910: BWI76_RS04910 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 1,029,429 to 1,032,047 _RS04910 Position (kb) 1027 1028 1029 1030Strain fitness (log2 ratio) -2 -1 0 1 2at 1026.944 kb on - strand, within BWI76_RS04900at 1027.291 kb on - strand, within BWI76_RS04900at 1027.562 kb on - strandat 1027.630 kb on - strandat 1027.667 kb on - strand, within BWI76_RS04905at 1027.786 kb on + strand, within BWI76_RS04905at 1028.048 kb on - strand, within BWI76_RS04905at 1028.268 kb on + strand, within BWI76_RS04905at 1028.712 kb on - strand, within BWI76_RS04905at 1028.831 kb on - strand, within BWI76_RS04905at 1028.846 kb on + strand, within BWI76_RS04905at 1028.926 kb on - strand, within BWI76_RS04905at 1028.926 kb on - strand, within BWI76_RS04905at 1028.926 kb on - strand, within BWI76_RS04905at 1028.962 kb on - strandat 1029.131 kb on + strandat 1029.241 kb on + strandat 1029.249 kb on - strandat 1029.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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1,026,944 - BWI76_RS04900 0.30 +0.3
1,027,291 - BWI76_RS04900 0.74 +1.3
1,027,562 - +0.2
1,027,630 - +2.2
1,027,667 - BWI76_RS04905 0.10 -0.4
1,027,786 + BWI76_RS04905 0.18 +0.2
1,028,048 - BWI76_RS04905 0.34 +0.3
1,028,268 + BWI76_RS04905 0.48 -1.4
1,028,712 - BWI76_RS04905 0.76 +1.4
1,028,831 - BWI76_RS04905 0.83 -0.4
1,028,846 + BWI76_RS04905 0.84 +1.7
1,028,926 - BWI76_RS04905 0.89 +0.3
1,028,926 - BWI76_RS04905 0.89 -0.3
1,028,926 - BWI76_RS04905 0.89 +1.2
1,028,962 - -1.4
1,029,131 + +0.3
1,029,241 + +0.1
1,029,249 - -1.8
1,029,276 - +0.0

Or see this region's nucleotide sequence