Experiment: KB with Xanthyletin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4392 and Psyr_4393 overlap by 1 nucleotides Psyr_4393 and Psyr_4394 are separated by 18 nucleotides Psyr_4394 and Psyr_4395 are separated by 1 nucleotides
Psyr_4392: Psyr_4392 - pilus assembly protein CpaE, at 5,253,975 to 5,255,165
_4392
Psyr_4393: Psyr_4393 - type II secretion system protein E, at 5,255,165 to 5,256,421
_4393
Psyr_4394: Psyr_4394 - type II secretion system protein, at 5,256,440 to 5,257,324
_4394
Psyr_4395: Psyr_4395 - type II secretion system protein, at 5,257,326 to 5,258,210
_4395
Position (kb) 5255
5256
5257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5254.479 kb on - strand, within Psyr_4392 at 5254.644 kb on + strand, within Psyr_4392 at 5254.645 kb on - strand, within Psyr_4392 at 5254.645 kb on - strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.809 kb on + strand, within Psyr_4392 at 5254.810 kb on - strand, within Psyr_4392 at 5255.249 kb on + strand at 5255.249 kb on + strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.342 kb on + strand, within Psyr_4393 at 5255.343 kb on - strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.118 kb on + strand, within Psyr_4393 at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.484 kb on + strand at 5256.506 kb on + strand at 5256.506 kb on + strand at 5256.507 kb on - strand at 5256.507 kb on - strand at 5256.671 kb on + strand, within Psyr_4394 at 5256.671 kb on + strand, within Psyr_4394 at 5256.672 kb on - strand, within Psyr_4394 at 5256.672 kb on - strand, within Psyr_4394 at 5256.685 kb on - strand, within Psyr_4394 at 5256.685 kb on - strand, within Psyr_4394 at 5256.776 kb on + strand, within Psyr_4394 at 5256.776 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5257.214 kb on + strand, within Psyr_4394 at 5257.214 kb on + strand, within Psyr_4394 at 5257.214 kb on + strand, within Psyr_4394 at 5257.214 kb on + strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.400 kb on + strand at 5257.400 kb on + strand at 5257.400 kb on + strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.403 kb on + strand at 5257.403 kb on + strand at 5257.404 kb on - strand at 5257.404 kb on - strand at 5257.404 kb on - strand at 5257.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Xanthyletin 10 mM remove 5,254,479 - Psyr_4392 0.42 -0.6 5,254,644 + Psyr_4392 0.56 -0.7 5,254,645 - Psyr_4392 0.56 +1.0 5,254,645 - Psyr_4392 0.56 +0.5 5,254,692 + Psyr_4392 0.60 -0.1 5,254,692 + Psyr_4392 0.60 -0.1 5,254,692 + Psyr_4392 0.60 -0.9 5,254,692 + Psyr_4392 0.60 -0.4 5,254,692 + Psyr_4392 0.60 +0.5 5,254,692 + Psyr_4392 0.60 -0.7 5,254,692 + Psyr_4392 0.60 +0.4 5,254,692 + Psyr_4392 0.60 +0.5 5,254,692 + Psyr_4392 0.60 -1.0 5,254,692 + Psyr_4392 0.60 +0.1 5,254,692 + Psyr_4392 0.60 -1.1 5,254,692 + Psyr_4392 0.60 +0.4 5,254,692 + Psyr_4392 0.60 +0.4 5,254,692 + Psyr_4392 0.60 -0.5 5,254,692 + Psyr_4392 0.60 +1.9 5,254,692 + Psyr_4392 0.60 +0.5 5,254,692 + Psyr_4392 0.60 +0.4 5,254,692 + Psyr_4392 0.60 -0.2 5,254,693 - Psyr_4392 0.60 -1.5 5,254,693 - Psyr_4392 0.60 +0.5 5,254,693 - Psyr_4392 0.60 -0.3 5,254,693 - Psyr_4392 0.60 +0.4 5,254,693 - Psyr_4392 0.60 +0.3 5,254,693 - Psyr_4392 0.60 +0.4 5,254,693 - Psyr_4392 0.60 +1.9 5,254,693 - Psyr_4392 0.60 +0.0 5,254,693 - Psyr_4392 0.60 -0.7 5,254,693 - Psyr_4392 0.60 -0.5 5,254,693 - Psyr_4392 0.60 +1.1 5,254,693 - Psyr_4392 0.60 -0.7 5,254,693 - Psyr_4392 0.60 +0.7 5,254,694 + Psyr_4392 0.60 -0.3 5,254,694 + Psyr_4392 0.60 -0.5 5,254,694 + Psyr_4392 0.60 +0.8 5,254,694 + Psyr_4392 0.60 +0.1 5,254,694 + Psyr_4392 0.60 -0.2 5,254,694 + Psyr_4392 0.60 -0.1 5,254,694 + Psyr_4392 0.60 -0.4 5,254,695 - Psyr_4392 0.60 +0.0 5,254,695 - Psyr_4392 0.60 +1.5 5,254,695 - Psyr_4392 0.60 -0.5 5,254,695 - Psyr_4392 0.60 +1.3 5,254,748 - Psyr_4392 0.65 -1.3 5,254,748 - Psyr_4392 0.65 -0.4 5,254,748 - Psyr_4392 0.65 -1.0 5,254,809 + Psyr_4392 0.70 -0.1 5,254,810 - Psyr_4392 0.70 +0.3 5,255,249 + -0.4 5,255,249 + +0.6 5,255,250 - +2.1 5,255,250 - -0.7 5,255,250 - -0.1 5,255,250 - +2.4 5,255,342 + Psyr_4393 0.14 +0.3 5,255,343 - Psyr_4393 0.14 -0.1 5,256,078 + Psyr_4393 0.73 +0.3 5,256,078 + Psyr_4393 0.73 +0.5 5,256,078 + Psyr_4393 0.73 +0.5 5,256,078 + Psyr_4393 0.73 -0.4 5,256,078 + Psyr_4393 0.73 +0.7 5,256,079 - Psyr_4393 0.73 -0.1 5,256,079 - Psyr_4393 0.73 +1.9 5,256,079 - Psyr_4393 0.73 +0.4 5,256,118 + Psyr_4393 0.76 +1.1 5,256,320 + -0.5 5,256,320 + +1.4 5,256,320 + -1.0 5,256,320 + -0.2 5,256,320 + +0.5 5,256,320 + -0.0 5,256,320 + +0.5 5,256,320 + +0.0 5,256,320 + -0.6 5,256,320 + -0.1 5,256,320 + +0.7 5,256,320 + +0.3 5,256,320 + -1.9 5,256,320 + -1.1 5,256,320 + +1.0 5,256,320 + +1.7 5,256,320 + +0.2 5,256,320 + -1.2 5,256,320 + -0.6 5,256,320 + +0.3 5,256,320 + -0.5 5,256,320 + +1.0 5,256,320 + +0.5 5,256,320 + +1.0 5,256,320 + -0.6 5,256,320 + +0.2 5,256,320 + -0.4 5,256,320 + +1.9 5,256,320 + +0.1 5,256,320 + +0.7 5,256,320 + +0.8 5,256,320 + +1.5 5,256,320 + -0.5 5,256,320 + -0.1 5,256,321 - +0.7 5,256,321 - +0.3 5,256,321 - +0.0 5,256,321 - +0.0 5,256,321 - +0.3 5,256,321 - +0.3 5,256,321 - +0.5 5,256,321 - +0.8 5,256,321 - -1.0 5,256,321 - +1.3 5,256,321 - +0.6 5,256,321 - +0.1 5,256,321 - -0.5 5,256,321 - -0.4 5,256,321 - -0.4 5,256,321 - -0.5 5,256,321 - +0.2 5,256,321 - -0.3 5,256,321 - +0.8 5,256,321 - +0.1 5,256,321 - -1.2 5,256,321 - -0.1 5,256,321 - +0.2 5,256,321 - -0.1 5,256,321 - +1.1 5,256,484 + +0.8 5,256,506 + -0.1 5,256,506 + +0.2 5,256,507 - -0.3 5,256,507 - -0.2 5,256,671 + Psyr_4394 0.26 +0.5 5,256,671 + Psyr_4394 0.26 +0.2 5,256,672 - Psyr_4394 0.26 -0.1 5,256,672 - Psyr_4394 0.26 +2.1 5,256,685 - Psyr_4394 0.28 +0.3 5,256,685 - Psyr_4394 0.28 -0.2 5,256,776 + Psyr_4394 0.38 -0.1 5,256,776 + Psyr_4394 0.38 +0.9 5,256,939 + Psyr_4394 0.56 -1.6 5,256,939 + Psyr_4394 0.56 +0.2 5,256,939 + Psyr_4394 0.56 +0.1 5,256,939 + Psyr_4394 0.56 -1.2 5,256,939 + Psyr_4394 0.56 -1.5 5,256,939 + Psyr_4394 0.56 -1.4 5,256,939 + Psyr_4394 0.56 +1.8 5,256,939 + Psyr_4394 0.56 -0.2 5,256,940 - Psyr_4394 0.56 -0.5 5,256,940 - Psyr_4394 0.56 -0.1 5,256,940 - Psyr_4394 0.56 +0.1 5,256,940 - Psyr_4394 0.56 +0.9 5,256,940 - Psyr_4394 0.56 +1.1 5,256,989 + Psyr_4394 0.62 +0.4 5,256,989 + Psyr_4394 0.62 -0.0 5,256,989 + Psyr_4394 0.62 +0.1 5,256,989 + Psyr_4394 0.62 +0.1 5,256,989 + Psyr_4394 0.62 +0.3 5,256,989 + Psyr_4394 0.62 -0.1 5,256,989 + Psyr_4394 0.62 -0.5 5,256,990 - Psyr_4394 0.62 -1.1 5,256,990 - Psyr_4394 0.62 -0.6 5,256,990 - Psyr_4394 0.62 -0.9 5,256,990 - Psyr_4394 0.62 +0.2 5,256,990 - Psyr_4394 0.62 +1.2 5,256,990 - Psyr_4394 0.62 -0.6 5,256,990 - Psyr_4394 0.62 -0.8 5,257,214 + Psyr_4394 0.87 -1.1 5,257,214 + Psyr_4394 0.87 +0.2 5,257,214 + Psyr_4394 0.87 +0.7 5,257,214 + Psyr_4394 0.87 +0.3 5,257,215 - Psyr_4394 0.88 +0.4 5,257,215 - Psyr_4394 0.88 +0.7 5,257,215 - Psyr_4394 0.88 -1.9 5,257,215 - Psyr_4394 0.88 +1.1 5,257,215 - Psyr_4394 0.88 -0.0 5,257,225 + Psyr_4394 0.89 +1.1 5,257,225 + Psyr_4394 0.89 +0.4 5,257,225 + Psyr_4394 0.89 -1.2 5,257,225 + Psyr_4394 0.89 +0.6 5,257,225 + Psyr_4394 0.89 +1.5 5,257,225 + Psyr_4394 0.89 -0.5 5,257,225 + Psyr_4394 0.89 +1.1 5,257,225 + Psyr_4394 0.89 +0.4 5,257,225 + Psyr_4394 0.89 +1.0 5,257,225 + Psyr_4394 0.89 -1.0 5,257,225 + Psyr_4394 0.89 -0.9 5,257,225 + Psyr_4394 0.89 -0.9 5,257,225 + Psyr_4394 0.89 -0.3 5,257,225 + Psyr_4394 0.89 +0.1 5,257,225 + Psyr_4394 0.89 +0.5 5,257,225 + Psyr_4394 0.89 -1.1 5,257,225 + Psyr_4394 0.89 -1.6 5,257,225 + Psyr_4394 0.89 +2.1 5,257,225 + Psyr_4394 0.89 -0.2 5,257,226 - Psyr_4394 0.89 -0.0 5,257,226 - Psyr_4394 0.89 -0.0 5,257,226 - Psyr_4394 0.89 +0.1 5,257,226 - Psyr_4394 0.89 +0.3 5,257,226 - Psyr_4394 0.89 +0.0 5,257,226 - Psyr_4394 0.89 -0.3 5,257,226 - Psyr_4394 0.89 -0.9 5,257,226 - Psyr_4394 0.89 -0.1 5,257,226 - Psyr_4394 0.89 -0.1 5,257,226 - Psyr_4394 0.89 -0.2 5,257,226 - Psyr_4394 0.89 -0.7 5,257,226 - Psyr_4394 0.89 -3.0 5,257,226 - Psyr_4394 0.89 -0.2 5,257,226 - Psyr_4394 0.89 +0.9 5,257,226 - Psyr_4394 0.89 -0.8 5,257,226 - Psyr_4394 0.89 +0.6 5,257,226 - Psyr_4394 0.89 -0.7 5,257,226 - Psyr_4394 0.89 -0.5 5,257,226 - Psyr_4394 0.89 -0.7 5,257,226 - Psyr_4394 0.89 -0.0 5,257,226 - Psyr_4394 0.89 -0.3 5,257,226 - Psyr_4394 0.89 -0.2 5,257,400 + -0.6 5,257,400 + -0.2 5,257,400 + +0.4 5,257,401 - +0.3 5,257,401 - +0.9 5,257,401 - -0.2 5,257,401 - -1.5 5,257,401 - +0.1 5,257,401 - -0.9 5,257,401 - +0.2 5,257,401 - -0.0 5,257,403 + +1.1 5,257,403 + -0.4 5,257,404 - -0.1 5,257,404 - +0.1 5,257,404 - +0.5 5,257,404 - +0.3
Or see this region's nucleotide sequence