Strain Fitness in Shewanella oneidensis MR-1 around SO2300

Experiment: fumarate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthrS and infC are separated by 114 nucleotidesinfC and rpmI are separated by 85 nucleotidesrpmI and rplT are separated by 16 nucleotidesrplT and trxB are separated by 181 nucleotides SO2299: thrS - threonyl-tRNA synthetase (NCBI ptt file), at 2,410,456 to 2,412,384 thrS SO2300: infC - translation initiation factor IF-3 (NCBI ptt file), at 2,412,499 to 2,412,930 infC SO2301: rpmI - ribosomal protein L35 (NCBI ptt file), at 2,413,016 to 2,413,210 rpmI SO2302: rplT - ribosomal protein L20 (NCBI ptt file), at 2,413,227 to 2,413,583 rplT SO2303: trxB - thioredoxin reductase (NCBI ptt file), at 2,413,765 to 2,414,718 trxB Position (kb) 2412 2413Strain fitness (log2 ratio) -1 0 1at 2413.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor
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2,413,692 + +0.2

Or see this region's nucleotide sequence