Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0789 and SO0791 are separated by 409 nucleotides SO0791 and SO0792 are separated by 256 nucleotides SO0792 and SO0793 are separated by 323 nucleotides
SO0789: SO0789 - putative short chain dehydrogenase (NCBI ptt file), at 803,222 to 803,839
SO0789
SO0791: SO0791 - transcriptional regulator, LysR family (NCBI ptt file), at 804,249 to 805,112
SO0791
SO0792: SO0792 - conserved hypothetical protein (NCBI ptt file), at 805,369 to 805,758
SO0792
SO0793: SO0793 - hypothetical protein (NCBI ptt file), at 806,082 to 806,369
SO0793
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 803.273 kb on + strand at 803.281 kb on - strand at 803.281 kb on - strand at 803.374 kb on - strand, within SO0789 at 803.382 kb on - strand, within SO0789 at 803.396 kb on - strand, within SO0789 at 803.559 kb on + strand, within SO0789 at 803.563 kb on + strand, within SO0789 at 803.593 kb on - strand, within SO0789 at 803.620 kb on + strand, within SO0789 at 803.628 kb on - strand, within SO0789 at 803.629 kb on + strand, within SO0789 at 803.636 kb on - strand, within SO0789 at 803.637 kb on - strand, within SO0789 at 803.652 kb on - strand, within SO0789 at 803.670 kb on + strand, within SO0789 at 803.683 kb on + strand, within SO0789 at 803.783 kb on - strand at 803.783 kb on - strand at 803.783 kb on - strand at 803.789 kb on + strand at 803.794 kb on + strand at 803.867 kb on + strand at 803.962 kb on - strand at 803.988 kb on + strand at 803.996 kb on - strand at 804.000 kb on + strand at 804.010 kb on + strand at 804.010 kb on + strand at 804.010 kb on + strand at 804.018 kb on - strand at 804.018 kb on - strand at 804.025 kb on + strand at 804.027 kb on - strand at 804.027 kb on - strand at 804.033 kb on - strand at 804.324 kb on + strand at 804.332 kb on - strand at 804.397 kb on - strand, within SO0791 at 804.397 kb on - strand, within SO0791 at 804.399 kb on + strand, within SO0791 at 804.500 kb on + strand, within SO0791 at 804.524 kb on - strand, within SO0791 at 804.533 kb on + strand, within SO0791 at 804.575 kb on + strand, within SO0791 at 804.583 kb on - strand, within SO0791 at 804.636 kb on - strand, within SO0791 at 804.637 kb on - strand, within SO0791 at 804.652 kb on + strand, within SO0791 at 804.660 kb on - strand, within SO0791 at 804.660 kb on - strand, within SO0791 at 804.660 kb on - strand, within SO0791 at 804.660 kb on - strand, within SO0791 at 804.707 kb on + strand, within SO0791 at 804.731 kb on + strand, within SO0791 at 804.819 kb on + strand, within SO0791 at 804.827 kb on + strand, within SO0791 at 804.829 kb on + strand, within SO0791 at 804.899 kb on - strand, within SO0791 at 804.909 kb on + strand, within SO0791 at 804.953 kb on + strand, within SO0791 at 804.953 kb on + strand, within SO0791 at 804.953 kb on + strand, within SO0791 at 804.953 kb on + strand, within SO0791 at 804.953 kb on + strand, within SO0791 at 804.953 kb on + strand, within SO0791 at 804.953 kb on + strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 804.961 kb on - strand, within SO0791 at 805.076 kb on - strand at 805.139 kb on - strand at 805.147 kb on + strand at 805.147 kb on + strand at 805.155 kb on - strand at 805.349 kb on - strand at 805.351 kb on + strand at 805.388 kb on - strand at 805.525 kb on + strand, within SO0792 at 805.533 kb on + strand, within SO0792 at 805.533 kb on - strand, within SO0792 at 805.552 kb on + strand, within SO0792 at 805.553 kb on - strand, within SO0792 at 805.626 kb on + strand, within SO0792 at 805.676 kb on + strand, within SO0792 at 805.705 kb on + strand, within SO0792 at 805.715 kb on + strand, within SO0792 at 805.715 kb on + strand, within SO0792 at 805.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 803,273 + +0.6 803,281 - +0.4 803,281 - -3.6 803,374 - SO0789 0.25 +0.1 803,382 - SO0789 0.26 +1.7 803,396 - SO0789 0.28 +0.2 803,559 + SO0789 0.55 +1.6 803,563 + SO0789 0.55 -0.0 803,593 - SO0789 0.60 +0.2 803,620 + SO0789 0.64 +1.1 803,628 - SO0789 0.66 -0.1 803,629 + SO0789 0.66 -0.9 803,636 - SO0789 0.67 +1.1 803,637 - SO0789 0.67 -0.6 803,652 - SO0789 0.70 +0.6 803,670 + SO0789 0.72 -1.6 803,683 + SO0789 0.75 -0.2 803,783 - +2.0 803,783 - +0.5 803,783 - +1.3 803,789 + -1.4 803,794 + +0.8 803,867 + -0.3 803,962 - +0.1 803,988 + +0.0 803,996 - -0.7 804,000 + -0.8 804,010 + +0.2 804,010 + -0.1 804,010 + -2.1 804,018 - -0.4 804,018 - -2.6 804,025 + -0.1 804,027 - +0.0 804,027 - +0.6 804,033 - +0.1 804,324 + -1.3 804,332 - -1.3 804,397 - SO0791 0.17 +0.9 804,397 - SO0791 0.17 +0.3 804,399 + SO0791 0.17 -0.1 804,500 + SO0791 0.29 +1.0 804,524 - SO0791 0.32 -1.8 804,533 + SO0791 0.33 +0.5 804,575 + SO0791 0.38 +1.0 804,583 - SO0791 0.39 +1.3 804,636 - SO0791 0.45 -3.0 804,637 - SO0791 0.45 +3.6 804,652 + SO0791 0.47 -0.5 804,660 - SO0791 0.48 +0.2 804,660 - SO0791 0.48 +0.2 804,660 - SO0791 0.48 +1.3 804,660 - SO0791 0.48 +0.2 804,707 + SO0791 0.53 +0.6 804,731 + SO0791 0.56 +0.7 804,819 + SO0791 0.66 +2.1 804,827 + SO0791 0.67 -0.8 804,829 + SO0791 0.67 +2.2 804,899 - SO0791 0.75 +0.5 804,909 + SO0791 0.76 +0.7 804,953 + SO0791 0.81 +0.2 804,953 + SO0791 0.81 +0.4 804,953 + SO0791 0.81 +0.0 804,953 + SO0791 0.81 +0.3 804,953 + SO0791 0.81 -0.0 804,953 + SO0791 0.81 +0.2 804,953 + SO0791 0.81 -0.6 804,961 - SO0791 0.82 -0.3 804,961 - SO0791 0.82 -0.1 804,961 - SO0791 0.82 +1.8 804,961 - SO0791 0.82 +1.3 804,961 - SO0791 0.82 -2.2 804,961 - SO0791 0.82 -0.7 804,961 - SO0791 0.82 +0.7 804,961 - SO0791 0.82 +0.9 804,961 - SO0791 0.82 -0.4 804,961 - SO0791 0.82 +1.0 804,961 - SO0791 0.82 +0.3 804,961 - SO0791 0.82 -0.2 804,961 - SO0791 0.82 +0.8 805,076 - -1.4 805,139 - +0.4 805,147 + +1.3 805,147 + -1.9 805,155 - +0.3 805,349 - +0.4 805,351 + +0.0 805,388 - -2.7 805,525 + SO0792 0.40 +0.2 805,533 + SO0792 0.42 +1.1 805,533 - SO0792 0.42 -0.4 805,552 + SO0792 0.47 +0.4 805,553 - SO0792 0.47 +0.3 805,626 + SO0792 0.66 +0.4 805,676 + SO0792 0.79 -0.4 805,705 + SO0792 0.86 +0.5 805,715 + SO0792 0.89 +3.4 805,715 + SO0792 0.89 -0.2 805,753 + +0.4
Or see this region's nucleotide sequence