Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0555 and SO0556 are separated by 139 nucleotides SO0556 and SO0557 are separated by 48 nucleotides SO0557 and smtA are separated by 144 nucleotides
SO0555: SO0555 - conserved hypothetical protein (NCBI ptt file), at 574,760 to 576,514
SO0555
SO0556: SO0556 - hypothetical protein (NCBI ptt file), at 576,654 to 576,962
SO0556
SO0557: SO0557 - conserved hypothetical protein (NCBI ptt file), at 577,011 to 577,907
SO0557
SO0558: smtA - smtA protein (NCBI ptt file), at 578,052 to 578,834
smtA
Position (kb) 577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 576.039 kb on + strand, within SO0555 at 576.047 kb on - strand, within SO0555 at 576.047 kb on - strand, within SO0555 at 576.060 kb on + strand, within SO0555 at 576.062 kb on + strand, within SO0555 at 576.070 kb on - strand, within SO0555 at 576.091 kb on + strand, within SO0555 at 576.096 kb on + strand, within SO0555 at 576.099 kb on - strand, within SO0555 at 576.192 kb on - strand, within SO0555 at 576.208 kb on + strand, within SO0555 at 576.268 kb on - strand, within SO0555 at 576.279 kb on - strand, within SO0555 at 576.385 kb on + strand at 576.385 kb on + strand at 576.400 kb on + strand at 576.408 kb on - strand at 576.408 kb on - strand at 576.408 kb on - strand at 576.408 kb on - strand at 576.499 kb on + strand at 576.507 kb on - strand at 576.545 kb on + strand at 576.545 kb on + strand at 576.545 kb on + strand at 576.553 kb on - strand at 576.553 kb on - strand at 576.553 kb on - strand at 576.680 kb on - strand at 576.682 kb on + strand at 576.682 kb on + strand at 576.722 kb on - strand, within SO0556 at 576.736 kb on + strand, within SO0556 at 576.804 kb on + strand, within SO0556 at 576.967 kb on - strand at 577.007 kb on + strand at 577.008 kb on - strand at 577.046 kb on + strand at 577.061 kb on + strand at 577.076 kb on + strand at 577.158 kb on - strand, within SO0557 at 577.158 kb on - strand, within SO0557 at 577.214 kb on - strand, within SO0557 at 577.389 kb on + strand, within SO0557 at 577.389 kb on + strand, within SO0557 at 577.389 kb on + strand, within SO0557 at 577.389 kb on + strand, within SO0557 at 577.572 kb on - strand, within SO0557 at 577.576 kb on + strand, within SO0557 at 577.576 kb on + strand, within SO0557 at 577.584 kb on - strand, within SO0557 at 577.584 kb on - strand, within SO0557 at 577.622 kb on - strand, within SO0557 at 577.667 kb on - strand, within SO0557 at 577.667 kb on - strand, within SO0557 at 577.713 kb on - strand, within SO0557 at 577.793 kb on + strand, within SO0557 at 577.813 kb on + strand, within SO0557 at 577.935 kb on - strand at 578.049 kb on + strand at 578.073 kb on + strand at 578.109 kb on + strand at 578.146 kb on - strand, within smtA at 578.246 kb on + strand, within smtA at 578.352 kb on + strand, within smtA at 578.463 kb on + strand, within smtA at 578.484 kb on - strand, within smtA at 578.494 kb on - strand, within smtA at 578.531 kb on - strand, within smtA at 578.532 kb on - strand, within smtA at 578.569 kb on - strand, within smtA at 578.595 kb on + strand, within smtA at 578.717 kb on + strand, within smtA at 578.745 kb on + strand, within smtA at 578.753 kb on - strand, within smtA at 578.760 kb on + strand at 578.768 kb on - strand at 578.775 kb on - strand at 578.836 kb on + strand at 578.836 kb on + strand at 578.836 kb on + strand at 578.846 kb on + strand at 578.846 kb on + strand at 578.860 kb on - strand at 578.864 kb on - strand at 578.866 kb on + strand at 578.876 kb on + strand at 578.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 576,039 + SO0555 0.73 +2.1 576,047 - SO0555 0.73 +0.8 576,047 - SO0555 0.73 -3.2 576,060 + SO0555 0.74 +0.1 576,062 + SO0555 0.74 -1.4 576,070 - SO0555 0.75 -1.0 576,091 + SO0555 0.76 +1.4 576,096 + SO0555 0.76 -0.4 576,099 - SO0555 0.76 -1.5 576,192 - SO0555 0.82 +0.8 576,208 + SO0555 0.83 -0.7 576,268 - SO0555 0.86 -1.5 576,279 - SO0555 0.87 +0.6 576,385 + -0.2 576,385 + +0.8 576,400 + +0.9 576,408 - -1.2 576,408 - +1.0 576,408 - -0.7 576,408 - -0.2 576,499 + +0.8 576,507 - +0.2 576,545 + +0.4 576,545 + -1.0 576,545 + +0.2 576,553 - +0.8 576,553 - -0.0 576,553 - +0.7 576,680 - -3.6 576,682 + -0.1 576,682 + -1.6 576,722 - SO0556 0.22 -0.6 576,736 + SO0556 0.27 +0.8 576,804 + SO0556 0.49 +1.3 576,967 - -1.2 577,007 + -0.4 577,008 - +2.4 577,046 + -2.1 577,061 + -1.6 577,076 + +1.2 577,158 - SO0557 0.16 +0.9 577,158 - SO0557 0.16 +0.9 577,214 - SO0557 0.23 -0.4 577,389 + SO0557 0.42 -0.4 577,389 + SO0557 0.42 +1.4 577,389 + SO0557 0.42 -1.4 577,389 + SO0557 0.42 +0.2 577,572 - SO0557 0.63 +1.1 577,576 + SO0557 0.63 +2.7 577,576 + SO0557 0.63 +0.2 577,584 - SO0557 0.64 -0.3 577,584 - SO0557 0.64 -2.4 577,622 - SO0557 0.68 +1.1 577,667 - SO0557 0.73 -1.7 577,667 - SO0557 0.73 -2.0 577,713 - SO0557 0.78 +0.5 577,793 + SO0557 0.87 +1.9 577,813 + SO0557 0.89 +0.2 577,935 - -0.1 578,049 + -1.3 578,073 + +0.0 578,109 + +2.1 578,146 - smtA SO0558 0.12 -1.0 578,246 + smtA SO0558 0.25 +0.3 578,352 + smtA SO0558 0.38 +0.3 578,463 + smtA SO0558 0.52 +1.0 578,484 - smtA SO0558 0.55 -0.3 578,494 - smtA SO0558 0.56 -0.8 578,531 - smtA SO0558 0.61 +0.2 578,532 - smtA SO0558 0.61 -0.3 578,569 - smtA SO0558 0.66 -2.8 578,595 + smtA SO0558 0.69 +2.4 578,717 + smtA SO0558 0.85 -0.2 578,745 + smtA SO0558 0.89 -0.7 578,753 - smtA SO0558 0.90 +4.0 578,760 + -1.3 578,768 - -0.0 578,775 - -1.7 578,836 + +0.0 578,836 + -1.4 578,836 + +1.7 578,846 + +0.4 578,846 + -1.0 578,860 - -0.3 578,864 - -1.4 578,866 + +0.3 578,876 + -1.8 578,884 - +0.6
Or see this region's nucleotide sequence